--- ccp4-5.99.5/lib/clipper/configure.orig 2006-01-07 16:54:13.000000000 -0800 +++ ccp4-5.99.5/lib/clipper/configure 2006-01-07 16:54:31.000000000 -0800 @@ -21751,7 +21751,7 @@ if test "x$mccp4_prefix" != x; then # ie. mccp4=thing was given (thing is what we're checking for) - ac_MCCP4_CXXFLAGS="-I$mccp4_prefix/include" + ac_MCCP4_CXXFLAGS="-I$mccp4_prefix/include -I$mccp4_prefix/include/mccp4" ac_MCCP4_LDOPTS="-L$mccp4_prefix/lib -lmccp4" else # treat as standard lib/include