From 51db7e2b8ea69f3146c325079c807357394b9da4 Mon Sep 17 00:00:00 2001 From: Olivier Fisette Date: Sun, 9 Jan 2005 18:39:11 +0000 Subject: Changed versioning scheme. --- sci-biology/njplot/ChangeLog | 8 +++++- sci-biology/njplot/Manifest | 2 ++ sci-biology/njplot/files/digest-njplot-1 | 1 - sci-biology/njplot/files/digest-njplot-20050109 | 1 + sci-biology/njplot/njplot-1.ebuild | 35 ----------------------- sci-biology/njplot/njplot-20050109.ebuild | 33 +++++++++++++++++++++ sci-biology/seaview/ChangeLog | 10 +++++-- sci-biology/seaview/Manifest | 2 ++ sci-biology/seaview/files/29seaview | 1 - sci-biology/seaview/files/digest-seaview-1-r1 | 1 - sci-biology/seaview/files/digest-seaview-20041220 | 1 + sci-biology/seaview/seaview-1-r1.ebuild | 35 ----------------------- sci-biology/seaview/seaview-20041220.ebuild | 30 +++++++++++++++++++ 13 files changed, 84 insertions(+), 76 deletions(-) delete mode 100644 sci-biology/njplot/files/digest-njplot-1 create mode 100644 sci-biology/njplot/files/digest-njplot-20050109 delete mode 100644 sci-biology/njplot/njplot-1.ebuild create mode 100644 sci-biology/njplot/njplot-20050109.ebuild delete mode 100644 sci-biology/seaview/files/29seaview delete mode 100644 sci-biology/seaview/files/digest-seaview-1-r1 create mode 100644 sci-biology/seaview/files/digest-seaview-20041220 delete mode 100644 sci-biology/seaview/seaview-1-r1.ebuild create mode 100644 sci-biology/seaview/seaview-20041220.ebuild (limited to 'sci-biology') diff --git a/sci-biology/njplot/ChangeLog b/sci-biology/njplot/ChangeLog index d22f9f4f150b..38776054b8e4 100644 --- a/sci-biology/njplot/ChangeLog +++ b/sci-biology/njplot/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/njplot-unrooted # Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/ChangeLog,v 1.1 2005/01/09 18:30:03 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/ChangeLog,v 1.2 2005/01/09 18:34:14 ribosome Exp $ + +*njplot-20050109 (09 Jan 2005) + + 09 Jan 2005; Olivier Fisette -njplot-1.ebuild, + +njplot-20050109.ebuild: + Changed versioning scheme. (Upstream does not use version numbers.) *njplot-1 (09 Jan 2005) diff --git a/sci-biology/njplot/Manifest b/sci-biology/njplot/Manifest index 2277f1c36b39..8c4455c05075 100644 --- a/sci-biology/njplot/Manifest +++ b/sci-biology/njplot/Manifest @@ -1,4 +1,6 @@ +MD5 f028dc57e2a99cb40722fae5412bd761 njplot-20050109.ebuild 839 MD5 0707bd52088bd9183070446128bda71f njplot-1.ebuild 805 MD5 d81ad28c7a708f0001c2f2b72c661215 ChangeLog 749 MD5 a1727bd238aff0cb1debdf9b11b21b5e metadata.xml 609 +MD5 50d788774b229a8b182ad47e44b7123d files/digest-njplot-20050109 67 MD5 72fe56f3a4074cf7324d469c568a242a files/digest-njplot-1 69 diff --git a/sci-biology/njplot/files/digest-njplot-1 b/sci-biology/njplot/files/digest-njplot-1 deleted file mode 100644 index 5d1ded51f641..000000000000 --- a/sci-biology/njplot/files/digest-njplot-1 +++ /dev/null @@ -1 +0,0 @@ -MD5 bd8228dbc78ab5858154063517d4b6e1 njplot-unrooted-1.tar.bz2 34352 diff --git a/sci-biology/njplot/files/digest-njplot-20050109 b/sci-biology/njplot/files/digest-njplot-20050109 new file mode 100644 index 000000000000..076d74c0d1cc --- /dev/null +++ b/sci-biology/njplot/files/digest-njplot-20050109 @@ -0,0 +1 @@ +MD5 90e5a9285c976929aaa8a8b04d73d806 njplot-20050109.tar.bz2 36953 diff --git a/sci-biology/njplot/njplot-1.ebuild b/sci-biology/njplot/njplot-1.ebuild deleted file mode 100644 index 7b6583018a1e..000000000000 --- a/sci-biology/njplot/njplot-1.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2005 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/njplot-1.ebuild,v 1.1 2005/01/09 18:30:03 ribosome Exp $ - -DESCRIPTION="A phylogenetic tree drawing program which supports tree rooting" -HOMEPAGE="http://pbil.univ-lyon1.fr/software/njplot.html" -SRC_URI="mirror://gentoo/njplot-unrooted-1.tar.bz2" -LICENSE="public-domain" - -SLOT="0" -KEYWORDS="~x86" -IUSE="" - -DEPEND="sci-biology/ncbi-tools - virtual/x11" - -src_unpack() { - unpack ${A} - cd ${S} - sed -i -e "s%njplot.help%/usr/share/doc/${PF}/njplot.help%" njplot-vib.c -} - -src_compile() { - make -e || die -} - -src_install() { - dobin newicktops njplot unrooted - - insinto /usr/share/doc/${PF} - doins njplot.help - - insinto /usr/share/${PN} - doins test.ph -} diff --git a/sci-biology/njplot/njplot-20050109.ebuild b/sci-biology/njplot/njplot-20050109.ebuild new file mode 100644 index 000000000000..d42656d39f99 --- /dev/null +++ b/sci-biology/njplot/njplot-20050109.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/njplot-20050109.ebuild,v 1.1 2005/01/09 18:34:14 ribosome Exp $ + +DESCRIPTION="A phylogenetic tree drawing program which supports tree rooting" +HOMEPAGE="http://pbil.univ-lyon1.fr/software/njplot.html" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="public-domain" + +SLOT="0" +KEYWORDS="~x86" +IUSE="" + +DEPEND="sci-biology/ncbi-tools + virtual/x11" + +src_unpack() { + unpack ${A} + cd ${S} + sed -i -e "s%njplot.help%/usr/share/doc/${PF}/njplot.help%" njplot-vib.c +} + +src_compile() { + make all -e || die +} + +src_install() { + dobin add_root newicktops newicktotxt njplot unrooted + insinto /usr/share/doc/${PF} + doins njplot.help + insinto /usr/share/${PN} + doins test.ph +} diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog index ad465d87ae94..e108db353718 100644 --- a/sci-biology/seaview/ChangeLog +++ b/sci-biology/seaview/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/seaview -# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.2 2004/12/24 02:35:40 swegener Exp $ +# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.3 2005/01/09 18:39:11 ribosome Exp $ + +*seaview-20041220 (09 Jan 2005) + + 09 Jan 2005; Olivier Fisette -files/29seaview, + -seaview-1-r1.ebuild, +seaview-20041220.ebuild: + Changed versioning scheme. (Upstream does not use version numbers.) *seaview-1-r1 (23 Dec 2004) diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest index 04fe1cc30ebb..5b0e353906e8 100644 --- a/sci-biology/seaview/Manifest +++ b/sci-biology/seaview/Manifest @@ -1,5 +1,7 @@ +MD5 fcf3eb1d4e283ed8c940df12b4dbbb99 seaview-20041220.ebuild 867 MD5 f804e9a43d2b50d88d7d68591ad5129a ChangeLog 1159 MD5 1dd4c84764d44a71e93db41f6904b516 seaview-1-r1.ebuild 922 MD5 7b87a6c33de5295e356b67218bd4fba9 metadata.xml 614 MD5 81acca7fe3c919d7be4ef27307d9ce7d files/29seaview 26 MD5 ee3d2374f6b28744f1b282577c0dcb38 files/digest-seaview-1-r1 56 +MD5 d13f3abed50e95fdd7a2ced7815ebdc3 files/digest-seaview-20041220 69 diff --git a/sci-biology/seaview/files/29seaview b/sci-biology/seaview/files/29seaview deleted file mode 100644 index 64f2831dcaee..000000000000 --- a/sci-biology/seaview/files/29seaview +++ /dev/null @@ -1 +0,0 @@ -PATH="/usr/share/seaview" diff --git a/sci-biology/seaview/files/digest-seaview-1-r1 b/sci-biology/seaview/files/digest-seaview-1-r1 deleted file mode 100644 index 1b50df5638af..000000000000 --- a/sci-biology/seaview/files/digest-seaview-1-r1 +++ /dev/null @@ -1 +0,0 @@ -MD5 48db16486992fed35dad053fed0734e0 seaview.tar 560640 diff --git a/sci-biology/seaview/files/digest-seaview-20041220 b/sci-biology/seaview/files/digest-seaview-20041220 new file mode 100644 index 000000000000..246818de33a2 --- /dev/null +++ b/sci-biology/seaview/files/digest-seaview-20041220 @@ -0,0 +1 @@ +MD5 e8e0b37910cba741563759034896450e seaview-20041220.tar.bz2 115192 diff --git a/sci-biology/seaview/seaview-1-r1.ebuild b/sci-biology/seaview/seaview-1-r1.ebuild deleted file mode 100644 index a7f92da3b8f2..000000000000 --- a/sci-biology/seaview/seaview-1-r1.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2005 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-1-r1.ebuild,v 1.2 2005/01/02 15:24:52 ribosome Exp $ - -DESCRIPTION="A graphical multiple sequence alignment editor" -HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" -SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/${PN}/${PN}.tar" -LICENSE="public-domain" - -SLOT="0" -KEYWORDS="x86 ~ppc ~amd64" -IUSE="" - -DEPEND="x11-libs/fltk - sci-biology/clustalw" - -S=${WORKDIR} - -src_compile() { - # Corrects location of libfltk. - CFLAGS="${CFLAGS} -c -I/usr/include/fltk-1.1" - sed -ie 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile - - emake -e || die -} - -src_install() { - dobin seaview seaview_align.sh - insinto /usr/share/${PN} - doins protein.mase seaview.help - - # Sets the path for the package's help file. - insinto /etc/env.d - doins ${FILESDIR}/29seaview -} diff --git a/sci-biology/seaview/seaview-20041220.ebuild b/sci-biology/seaview/seaview-20041220.ebuild new file mode 100644 index 000000000000..00dfb5320c4b --- /dev/null +++ b/sci-biology/seaview/seaview-20041220.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20041220.ebuild,v 1.1 2005/01/09 18:39:11 ribosome Exp $ + +DESCRIPTION="A graphical multiple sequence alignment editor" +HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="public-domain" + +SLOT="0" +KEYWORDS="x86 ~ppc ~amd64" +IUSE="" + +DEPEND="x11-libs/fltk + sci-biology/clustalw" + +src_compile() { + # Corrects location of libfltk. + CFLAGS="${CFLAGS} -c -I/usr/include/fltk-1.1" + sed -i -e "s%\"seaview.help\", %\"/usr/share/${PN}/seaview.help\", %" seaview.cxx + sed -i -e 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile + + emake -e || die +} + +src_install() { + dobin seaview seaview_align.sh + insinto /usr/share/${PN} + doins protein.mase seaview.help +} -- cgit v1.2.3-65-gdbad