From 7c49e91cfc0f37a6e8673d20e04955d381ef4cbc Mon Sep 17 00:00:00 2001
From: Andrey Kislyuk <weaver@gentoo.org>
Date: Wed, 8 Jul 2009 04:12:05 +0000
Subject: Version bump Package-Manager: portage-2.2_rc30/cvs/Linux x86_64

---
 sci-biology/velvet/ChangeLog            |  7 +++++-
 sci-biology/velvet/Manifest             |  4 +++-
 sci-biology/velvet/velvet-0.7.42.ebuild | 42 +++++++++++++++++++++++++++++++++
 3 files changed, 51 insertions(+), 2 deletions(-)
 create mode 100644 sci-biology/velvet/velvet-0.7.42.ebuild

(limited to 'sci-biology/velvet')

diff --git a/sci-biology/velvet/ChangeLog b/sci-biology/velvet/ChangeLog
index 6e03c332fbe9..0ecec83ed919 100644
--- a/sci-biology/velvet/ChangeLog
+++ b/sci-biology/velvet/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/velvet
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.2 2009/06/21 14:49:00 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.3 2009/07/08 04:12:05 weaver Exp $
+
+*velvet-0.7.42 (07 Jul 2009)
+
+  07 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +velvet-0.7.42.ebuild:
+  Version bump
 
 *velvet-0.7.34 (21 Jun 2009)
 
diff --git a/sci-biology/velvet/Manifest b/sci-biology/velvet/Manifest
index 2bda698230f9..79b9d1e3ce10 100644
--- a/sci-biology/velvet/Manifest
+++ b/sci-biology/velvet/Manifest
@@ -1,6 +1,8 @@
 DIST velvet_0.7.31.tgz 3423497 RMD160 f0d7b0c67e500417f8ecb8dd456fa5213f34d14b SHA1 f5693eefd0e9b6aace3edb9c2c9139d10d3c8449 SHA256 a1f3e20090e630aeaf76622680d1f1df53d0824dc20c7120976c53f889038430
 DIST velvet_0.7.34.tgz 3761893 RMD160 083ce77b25bfa6b63322035a018a2ee438a73eae SHA1 b2a64ccee05a73890ecad4506ace3547dbd6ccae SHA256 30e0f393f3a346bed2dc1c8fc2fd28d2cda6b76a11dded67b58a4777f1370598
+DIST velvet_0.7.42.tgz 3448763 RMD160 c8ec551994c924844be384a42a1227313c09e784 SHA1 bb25d3c4a4af864b37b9e3e486777be858d73d10 SHA256 451e859e61e02c902dabe9e7cebfc57566e58e770382ec7686f68acd5728198a
 EBUILD velvet-0.7.31.ebuild 1064 RMD160 01079600826ecda926519a44f6f86e484e56e9b6 SHA1 d3784dd2fd7165cad98d639affdbefc283b4fb1b SHA256 05e679ba5d768304b365d41640005c986baf2fc83655cedf0332691728380293
 EBUILD velvet-0.7.34.ebuild 1064 RMD160 6604b6426e6881239e66322e39b33bbc37cc9159 SHA1 1ab3a11a2fbd71b1bee9aad137093059a6f0983f SHA256 e7f657d0d9d774bd41930845c548c8016ee6c74b4f0e6341cb91e2e23677b7e1
-MISC ChangeLog 485 RMD160 b6a5a5d8d174b98c84535db44787da7f5ea2aa77 SHA1 9becdb2d24cce3c56b5fd4de51e1faeddba55f83 SHA256 80a0cfdd832d1b2478a9b1d7fc832a50b75d29e0be2ec4ac17714d6218de96fb
+EBUILD velvet-0.7.42.ebuild 1056 RMD160 5ed3c5347641690c68e2657dfe7805d9d9fa7fdb SHA1 567483e45062fd9bffb2fa173ccd34e741dda52c SHA256 00de5aac80c2f7f1ba58d67fcfa12254bcf365c1b22438be65a2f41964fca675
+MISC ChangeLog 604 RMD160 6172d61afe604df3d1fee714ee278a7dd7f45ab1 SHA1 aa5d8d486807a3afaa23df5a2fdaa1ad65f3edcb SHA256 339eef0f0bfbd401a39ec75e99fcc64bd6caf72ff770f56cfef8b2a5bd86b4ca
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/velvet/velvet-0.7.42.ebuild b/sci-biology/velvet/velvet-0.7.42.ebuild
new file mode 100644
index 000000000000..3cbe310605d3
--- /dev/null
+++ b/sci-biology/velvet/velvet-0.7.42.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.42.ebuild,v 1.1 2009/07/08 04:12:05 weaver Exp $
+
+EAPI="2"
+
+MY_P="${PN}_${PV}"
+
+DESCRIPTION="A sequence assembler for very short reads"
+HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
+SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	rm -rf "${S}"/third-party/zlib*
+	sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
+		-e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
+		-e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
+		"${S}"/Makefile || die
+	sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
+}
+
+src_compile() {
+	emake -j1 || die
+	emake -j1 color || die
+}
+
+src_install() {
+	dobin velvet{g,h,g_de,h_de} || die
+	insinto /usr/share/${PN}
+	doins -r contrib || die
+	dodoc Manual.pdf CREDITS.txt
+}
-- 
cgit v1.2.3-65-gdbad