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* sci-biology/allpathslg: Version bump, fix compilation errors with gcc-4.7, ↵Justin Lecher2012-07-093-12/+54
| | | | | | #425472 Package-Manager: portage-2.2.0_alpha116/cvs/Linux x86_64
* sci-biology/mira: Drop oldJustin Lecher2012-07-084-113/+22
| | | | Package-Manager: portage-2.2.0_alpha116/cvs/Linux x86_64
* sci-biology/amos: Add fix for gcc-4.7, #425264; cleaned oldJustin Lecher2012-07-088-234/+43
| | | | Package-Manager: portage-2.2.0_alpha116/cvs/Linux x86_64
* sci-biology/seaview: Version Bump imported from sci overlay, prepared by ↵Justin Lecher2012-07-043-12/+92
| | | | | | Martin Mokrejs, #351005; fixes also compilation with gcc47, #424727 Package-Manager: portage-2.2.0_alpha115/cvs/Linux x86_64
* sci-biology/plink: Moved to EAPI=4, add fix for building with gcc-4.7, #424709Justin Lecher2012-07-044-16/+97
| | | | Package-Manager: portage-2.2.0_alpha115/cvs/Linux x86_64
* sci-biology/hmmer: Fix the patch, thanks xarthisius and bonsaikitten for helpJustin Lecher2012-06-283-136/+8
| | | | Package-Manager: portage-2.2.0_alpha114/cvs/Linux x86_64
* next patchJustin Lecher2012-06-281-0/+132
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* next tryJustin Lecher2012-06-282-11/+11
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* Plain patchJustin Lecher2012-06-281-5/+5
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* Fix patchJustin Lecher2012-06-283-15/+11
| | | | Package-Manager: portage-2.2.0_alpha114/cvs/Linux x86_64
* fix patch againJustin Lecher2012-06-283-11/+15
| | | | Package-Manager: portage-2.2.0_alpha114/cvs/Linux x86_64
* sci-biology/hmmer: Fix patch, screwed VCS tags, #423983Justin Lecher2012-06-283-13/+20
| | | | Package-Manager: portage-2.2.0_alpha114/cvs/Linux x86_64
* whitespaceMichael Sterrett2012-06-252-3/+3
| | | | Package-Manager: portage-2.1.10.49/cvs/Linux x86_64
* marked x86 per bug 418439Jeff Horelick2012-06-253-19/+8
| | | | Package-Manager: portage-2.2.0_alpha112/cvs/Linux i686
* sci-biology/vaal: Version BumpJustin Lecher2012-06-253-5/+54
| | | | Package-Manager: portage-2.2.0_alpha112/cvs/Linux x86_64
* sci-biology/vaal: Drop old, #309127; Handle openmp, don't install licenseJustin Lecher2012-06-255-73/+38
| | | | Package-Manager: portage-2.2.0_alpha112/cvs/Linux x86_64
* Fix building with gcc-4.7 wrt #423497 by Diego Elio Pettenò ↵Kacper Kowalik2012-06-255-24/+185
| | | | | | <flameeyes@gentoo.org>, drop -O3 -ggdb from CXXFLAGS Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/infernal: Fix for perl-5.16, #422561; move to EAPI=4Justin Lecher2012-06-254-27/+167
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/hmmer: Fix for build with perl-5.16, #421799; handle static-libsJustin Lecher2012-06-255-26/+165
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* Stable for amd64, wrt bug #418439Agostino Sarubbo2012-06-243-19/+16
| | | | Package-Manager: portage-2.1.10.65/cvs/Linux x86_64
* Don't install docs that are no longer there, thanks to David Abbott for the ↵Kacper Kowalik2012-06-233-21/+40
| | | | | | patch Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/bioperl-db: Add missing DEP on dev-perl/DBD-mysql, #422999Justin Lecher2012-06-233-12/+18
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/maq: Add patch for gcc-4.7, #422869Justin Lecher2012-06-234-11/+52
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/last: Version BUmp, allows to compile with gcc-4.7, #422573Justin Lecher2012-06-203-6/+54
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/prank: Fix compilation with gcc-4.7, #422581Justin Lecher2012-06-205-21/+52
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/abyss: Fix compilation with gcc-4.7, #422599; install docs ↵Justin Lecher2012-06-207-13/+96
| | | | | | inside /usr/share/doc/, #297205 Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/cd-hit: Version Bump, which fixes compilation problems with gcc ↵Justin Lecher2012-06-207-22/+193
| | | | | | 4.7, #422569; add missing eutils.eclass Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/bowtie: Version Bump, Fix compilation with gcc-4.7, #421919Justin Lecher2012-06-194-8/+107
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/ariadne: Correct deps, bump EAPI, handle static-libsJustin Lecher2012-06-144-25/+30
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* sci-biology/ncbi-tools: Change Version numbers from x to 0.x in order to be ↵Justin Lecher2012-06-134-43/+259
| | | | | | | able to follow upstream new versioning scheme; Drop old unstable Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 RepoMan-Options: --force
* sci-biology/clustalx: Cleaned oldJustin Lecher2012-06-133-13/+13
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* Remove old wrt bug #311481.Johannes Huber2012-06-133-56/+12
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* Stable for x86, wrt bug #416891Johannes Huber2012-06-132-20/+20
| | | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64 Manifest-Sign-Key: 0xF3CFD2BD
* Stable for x86, wrt bug #416891Johannes Huber2012-06-134-6/+12
| | | | Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64
* Stable for amd64, wrt bug #416891Agostino Sarubbo2012-06-042-34/+22
| | | | | Package-Manager: portage-2.1.10.49/cvs/Linux x86_64 Manifest-Sign-Key: 0x7CD2DC5D
* Stable for amd64, wrt bug #416891Agostino Sarubbo2012-06-044-6/+12
| | | | Package-Manager: portage-2.1.10.49/cvs/Linux x86_64
* sci-biology/ncbi-tools++: Fix for gcc-4.7; add rpath on prefixJustin Lecher2012-06-034-10/+663
| | | | Package-Manager: portage-2.2.0_alpha109/cvs/Linux x86_64
* version bumpAndrey Kislyuk2012-05-292-17/+13
| | | | | Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64 Manifest-Sign-Key: 0x16E7D8E6
* version bumpAndrey Kislyuk2012-05-296-72/+18
| | | | Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64
* version bumpAndrey Kislyuk2012-05-293-6/+48
| | | | Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64
* sci-biology/tree-puzzle: Corrected dep from sys-cluster/lam-mpi to ↵Justin Lecher2012-05-243-11/+13
| | | | | | virtual/mpi, #415765 Package-Manager: portage-2.2.0_alpha107/cvs/Linux x86_64
* sci-biology/ncbi-tools: Version BUmp, #416251; restructured large parts of ↵Justin Lecher2012-05-223-5/+161
| | | | | | the ebuild; move to EAPI=4 Package-Manager: portage-2.2.0_alpha107/cvs/Linux x86_64
* added ~x86-macos keywordChristoph Junghans2012-05-083-10/+18
| | | | Package-Manager: portage-2.2.0_alpha101/cvs/Linux i686
* sci-biology/bamtools: Remove unnecessary dieJustin Lecher2012-04-262-9/+12
| | | | Package-Manager: portage-2.2.0_alpha101/cvs/Linux x86_64
* sci-biology/pilercr: Move to EAPI=, remove unecessary dieJustin Lecher2012-04-263-19/+17
| | | | Package-Manager: portage-2.2.0_alpha101/cvs/Linux x86_64
* sci-biology/emboss: Drop oldJustin Lecher2012-04-264-135/+18
| | | | Package-Manager: portage-2.2.0_alpha101/cvs/Linux x86_64
* sci-biology/gibbs: Move to EAPI=4, drop oldJustin Lecher2012-04-263-59/+27
| | | | Package-Manager: portage-2.2.0_alpha101/cvs/Linux x86_64
* sci-biology/mcl: Move to EAPI=4Justin Lecher2012-04-265-31/+34
| | | | Package-Manager: portage-2.2.0_alpha101/cvs/Linux x86_64
* sci-biology/tree-puzzle: Add missing quotesJustin Lecher2012-04-262-4/+7
| | | | Package-Manager: portage-2.2.0_alpha101/cvs/Linux x86_64
* sci-biology/ncbi-tools: Dropped oldJustin Lecher2012-04-264-201/+14
| | | | Package-Manager: portage-2.2.0_alpha101/cvs/Linux x86_64