Get Gentoo!
gentoo.org sites
gentoo.org Wiki Bugs Forums Packages
Planet Archives Sources
Infra Status
summaryrefslogtreecommitdiff
path: root/sci-biology
Commit message (Collapse)AuthorAgeFilesLines
* Stable for x86, wrt bug #477144Agostino Sarubbo2013-07-273-18/+21
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for x86, wrt bug #477134Agostino Sarubbo2013-07-273-18/+21
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for x86, wrt bug #477186Agostino Sarubbo2013-07-273-18/+21
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #477144Agostino Sarubbo2013-07-213-21/+23
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #477134Agostino Sarubbo2013-07-213-20/+22
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #477186Agostino Sarubbo2013-07-213-11/+23
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* sci-biology/mafft: Keyword for ~-linuxJustin Lecher2013-07-193-8/+21
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/allpathslg: Version BumpJustin Lecher2013-07-174-10/+64
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/last: Version BumpJustin Lecher2013-07-173-8/+75
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/abyss: Moved to autotools-utils.eclassJustin Lecher2013-07-173-17/+35
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/seqan: Add missing depJustin Lecher2013-07-173-8/+22
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/bowtie: Version BumpJustin Lecher2013-07-173-8/+67
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/allpaths: Bump to EAPI=5Justin Lecher2013-07-173-13/+26
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/mira: Version BUmp; fixed compilation with dev-libs/boost-1.53.0 ↵Justin Lecher2013-07-073-12/+81
| | | | | | | and some libtool versions, #450322; thanks Martin Mokrejs for all his work Package-Manager: portage-2.2.0_alpha186/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Drop old; Bump versionJustin Lecher2013-07-0311-434/+16
| | | | | Package-Manager: portage-2.2.0_alpha186/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/biopython: Fix deps for pythonJustin Lecher2013-07-023-14/+13
| | | | | Package-Manager: portage-2.2.0_alpha186/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Version BumpJustin Lecher2013-06-243-5/+73
| | | | | Package-Manager: portage-2.2.0_alpha184/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* herd is now sci-biologySebastien Fabbro2013-06-196-28/+31
| | | | | Package-Manager: portage-2.2.01.22013-prefix/cvs/Linux x86_64 Manifest-Sign-Key: 0x13CB1360
* sci-biology/sibsim4: Drop maintainerJustin Lecher2013-06-183-12/+11
| | | | | Package-Manager: portage-2.2.0_alpha180/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: version BumpJustin Lecher2013-06-123-5/+73
| | | | | Package-Manager: portage-2.2.0_alpha179/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/ncbi-tools: Fix for prefixJustin Lecher2013-06-124-12/+17
| | | | | Package-Manager: portage-2.2.0_alpha179/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/biopython: Keyword ~-linuxJustin Lecher2013-06-063-9/+12
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Update to new upstream tarballJustin Lecher2013-06-062-8/+11
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Version BumpJustin Lecher2013-06-063-5/+73
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/vaal: Version BUmpJustin Lecher2013-06-023-7/+56
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/shrimp: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-293-10/+17
| | | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/vienna-rna: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-293-8/+13
| | | | | | | PYTHON_REQUIRED_USE) Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/seqan: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-293-9/+15
| | | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Use append-cppflags for preprocessor flagsJustin Lecher2013-05-263-8/+11
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Version Bump, add test functionJustin Lecher2013-05-264-7/+93
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Version BUmp, drop unnecessary dieJustin Lecher2013-05-214-13/+64
| | | | | Package-Manager: portage-2.2.0_alpha176/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* showing special permission during pkg_setup so that we 'display this notice.'Ian Stakenvicius2013-05-133-7/+13
| | | | | Package-Manager: portage-2.1.11.62/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* put back mirror restriction (was too excited about dropping fetch, forgot to ↵Ian Stakenvicius2013-05-133-8/+12
| | | | | | | re-add) Package-Manager: portage-2.1.11.62/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* Dropped fetch restriction and amended license, as Gentoo has been granted ↵Ian Stakenvicius2013-05-133-9/+13
| | | | | | | special permissions Package-Manager: portage-2.1.11.62/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* sci-biology/fasta: Version BUmpJustin Lecher2013-05-114-6/+168
| | | | | Package-Manager: portage-2.2.0_alpha174/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Fix USE=threads make flag magicJustin Lecher2013-04-293-8/+11
| | | | | Package-Manager: portage-2.2.0_alpha173/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Version BumpJustin Lecher2013-04-295-17/+288
| | | | | Package-Manager: portage-2.2.0_alpha173/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/biopython: Version BumpJustin Lecher2013-04-264-19/+69
| | | | | Package-Manager: portage-2.2.0_alpha173/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/clustal-omega: Version BUmpJustin Lecher2013-04-263-7/+44
| | | | | Package-Manager: portage-2.2.0_alpha173/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/profphd: Updated depsJustin Lecher2013-04-243-10/+17
| | | | | Package-Manager: portage-2.2.0_alpha173/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* restricted strip as technically that modifies the binaries, and we want to ↵Ian Stakenvicius2013-04-203-8/+15
| | | | | | | be as safe as possible wrt to the EULA Package-Manager: portage-2.1.11.55/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* minor fixes to conf.d and init.d filesIan Stakenvicius2013-04-165-8/+27
| | | | | Package-Manager: portage-2.1.11.55/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* fixing the commit that partially failedIan Stakenvicius2013-04-164-28/+50
|
* version bump, remove old; updated license and added RESTRICT as per license ↵Ian Stakenvicius2013-04-168-183/+95
| | | | | | | requirements, also added 32bit variant Package-Manager: portage-2.1.11.55/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* sci-biology/stride: Fix license, thanks ulm looking for correct licensingJustin Lecher2013-04-145-25/+29
| | | | | Package-Manager: portage-2.2.0_alpha171/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* Fix LICENSE, see README and notices in source files.Ulrich Müller2013-04-114-22/+32
| | | | | Package-Manager: portage-2.1.11.60/cvs/Linux x86_64 Manifest-Sign-Key: 0x9433907D693FB5B8!
* sci-biology/samtools: Install bcftools and vcfutils.pl pointed out by mahnmutJustin Lecher2013-03-293-6/+68
| | | | | Package-Manager: portage-2.2.0_alpha169/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/seqan: Correct doc installation pathJustin Lecher2013-03-293-9/+15
| | | | | Package-Manager: portage-2.2.0_alpha170/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/profphd: Add some more PREFIX loveJustin Lecher2013-03-213-7/+24
| | | | | Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/profphd: New additionJustin Lecher2013-03-193-2/+34
| | | | | Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916