diff options
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/trnascan-se/ChangeLog | 10 | ||||
-rw-r--r-- | sci-biology/trnascan-se/files/digest-trnascan-se-1.23 | 1 | ||||
-rw-r--r-- | sci-biology/trnascan-se/metadata.xml | 16 | ||||
-rw-r--r-- | sci-biology/trnascan-se/trnascan-se-1.23.ebuild | 37 |
4 files changed, 64 insertions, 0 deletions
diff --git a/sci-biology/trnascan-se/ChangeLog b/sci-biology/trnascan-se/ChangeLog new file mode 100644 index 000000000000..085d091c000f --- /dev/null +++ b/sci-biology/trnascan-se/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/trnascan-se +# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/ChangeLog,v 1.1 2005/01/30 18:25:40 ribosome Exp $ + +*trnascan-se-1.23 (30 Jan 2005) + + 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +trnascan-se-1.23.ebuild: + Initial import. + diff --git a/sci-biology/trnascan-se/files/digest-trnascan-se-1.23 b/sci-biology/trnascan-se/files/digest-trnascan-se-1.23 new file mode 100644 index 000000000000..8079b6849520 --- /dev/null +++ b/sci-biology/trnascan-se/files/digest-trnascan-se-1.23 @@ -0,0 +1 @@ +MD5 f993cea7fce0e68641360b1799640316 trnascan-se-1.23.tar.bz2 482202 diff --git a/sci-biology/trnascan-se/metadata.xml b/sci-biology/trnascan-se/metadata.xml new file mode 100644 index 000000000000..b5716d9ff73d --- /dev/null +++ b/sci-biology/trnascan-se/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> + <longdescription> + tRNAscan-SE detects ~99% of eukaryotic nuclear or prokaryotic tRNA + genes, with a false positive rate of less than one per 15 gigabases, + and with a search speed of about 30 kb/second. It was implemented for + large-scale human genome sequence analysis, but is applicable to + other DNAs as well. + </longdescription> +</pkgmetadata> diff --git a/sci-biology/trnascan-se/trnascan-se-1.23.ebuild b/sci-biology/trnascan-se/trnascan-se-1.23.ebuild new file mode 100644 index 000000000000..6383d30c6f5f --- /dev/null +++ b/sci-biology/trnascan-se/trnascan-se-1.23.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/trnascan-se-1.23.ebuild,v 1.1 2005/01/30 18:25:40 ribosome Exp $ + +inherit toolchain-funcs + +DESCRIPTION="tRNA detection in large-scale genome sequences" +HOMEPAGE="http://selab.wustl.edu/cgi-bin/selab.pl?mode=software%22#trnascan" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="GPL-2" + +SLOT="0" +KEYWORDS="~x86" +IUSE="" + +DEPEND="dev-lang/perl" + +src_compile() { + sed -i -e "s%BINDIR = \$(HOME)/bin%BINDIR = ${D}/usr/bin%" \ + -e "s%LIBDIR = \$(HOME)/lib/tRNAscan-SE%LIBDIR = ${D}/usr/share/${PN}%" \ + -e "s%MANDIR = \$(HOME)/man%MANDIR = ${D}/usr/share/man%" \ + -e "s%CC = gcc%CC = $(tc-getCC)%" \ + -e "s%CFLAGS = -O%CFLAGS = ${CFLAGS}%" \ + Makefile || die + emake || die +} + +src_install() { + make install || die + dodoc MANUAL README Release.history + insinto /usr/share/doc/${PF} + doins Manual.ps +} + +src_test() { + make testrun || die +} |