diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/rmblast/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/rmblast/Manifest | 27 | ||||
| -rw-r--r-- | sci-biology/rmblast/rmblast-1.2-r1.ebuild | 9 | ||||
| -rw-r--r-- | sci-biology/rmblast/rmblast-1.2.ebuild | 45 |
4 files changed, 30 insertions, 59 deletions
diff --git a/sci-biology/rmblast/ChangeLog b/sci-biology/rmblast/ChangeLog index 8315dc88314f..e98d9079a5fb 100644 --- a/sci-biology/rmblast/ChangeLog +++ b/sci-biology/rmblast/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/rmblast -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rmblast/ChangeLog,v 1.5 2013/03/11 16:55:57 jlec Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rmblast/ChangeLog,v 1.6 2015/06/16 08:38:38 jlec Exp $ + + 16 Jun 2015; Justin Lecher <jlec@gentoo.org> -rmblast-1.2.ebuild, + rmblast-1.2-r1.ebuild: + Add missing dependency on cpio, bug #513420 11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml: Drop Andrey as maintainer so that bugs get assigned to sci-biology directly diff --git a/sci-biology/rmblast/Manifest b/sci-biology/rmblast/Manifest index e2478de12581..977c9838312b 100644 --- a/sci-biology/rmblast/Manifest +++ b/sci-biology/rmblast/Manifest @@ -1,16 +1,27 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA256 +Hash: SHA512 AUX rmblast-1.2-gcc47.patch 31795 SHA256 f68cee00a42ab19612430cd19c6c26fd5b4f1bea78710577e3e18b8ace82896d SHA512 2db82b02b157dd39c21d1fc459c4837741088d0d764c994094096c15ce76331f33f68e7e8498f7ea43e4979cde2fd248baf0687ac08b147d1060b54ac55b83d0 WHIRLPOOL 5a258a4f3aa66afb24faa4b2708c13e478710059757ec1a63a90c23f15b003a6366477a30349f87841f31c3131a3ef3a4de17c1df27a54da639f915efbda55fe DIST rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz 10744076 SHA256 996be9886189364fff8ed39d4668122b2e5b8b010be47d929602416d95628eef SHA512 e7c2ebd114aee045ea3f3f462cf2658440e13a2d1eb777648386e1c5eeda9f8083af383c019f9b5802d935d6eb2367eef20822afc45233ddb44a426b4dd7ddb6 WHIRLPOOL aa3ada4297812a97614b0fe218de65d7474edfb5910e156eb09b625d45338a97b35f46876f5edf6105ead8b321a28f55ed7de2ad251bbc48ffd0cfa65ee2ac7a -EBUILD rmblast-1.2-r1.ebuild 1156 SHA256 59797b2048de3017469fbe85f03fb389a3613c960645e3ad7e3e4c5a5e078393 SHA512 50dad8de2a728a7392c9a8e8652d281cd39f2a3ae761fc0f24efd8c0bfd7c8939851f5715a7f53fc54748e473bb1a3c786996447b8f8b81687a0cd24738997bc WHIRLPOOL 84ed3705aafc4c3d239c720251760e15ad08f8c4102e72966cccd0a04b2ddeed54113e10887a8b78473a3741ad3ab489cc0455d33eb933149e0d7e7ee6e9547b -EBUILD rmblast-1.2.ebuild 1164 SHA256 3a707fa6aeae892bdeef8a80b827031487a662c4b0d7834edc2108743fb00f34 SHA512 a1919c5ae9289dc376b4146476f25aaaf734c7a69229a0bdef4d82eb83347a454b23b8e913cf461c25814411775aa87045c568791a7be138334c28b1ae118bc7 WHIRLPOOL fd9392b37595788a59209bedd6765d213b4c7549e7c38818e5a2581eae7f4b2b4ebeafa355648621ef239d70850fac8e3266a9a8c25e8051983ee66381502e8a -MISC ChangeLog 1044 SHA256 61bf415fbb2d261e72e5d497266c09b8316344d63884004d4f1415d6bb7631d0 SHA512 23786199ee3eed2728b525fe03a518fe22d0155003d57cb0ae22379276b140af77c80d16adbbf9b41ba7feb9e26fccc73644adc8e26e4509455865aa79c02b4a WHIRLPOOL c2b047afa608b86c29cdeaffc4e0733a0692fb1bf277854bcc6cd660c04e349046b3a6d52841edab1b7a708c3cc436505ce7b4a9f3c602230adc0fafef8d9024 +EBUILD rmblast-1.2-r1.ebuild 1172 SHA256 b4499fe25bb951efbf71802a762360d4f7ba4939196627fa6c7bbeb71328e8b6 SHA512 ebc7dfc5f9d0803a64be19283049b8f128bcb40c7f3325d3e1a628d0191b2f723a7b6a9d2f33e27eeeccf9de09cfdba178558cfd2fd68a1f36c0728d23376264 WHIRLPOOL f36ee3f01fd6570f8e5763e31ad51a3d1f0d4f4b6ca41199f16f806de278c14c2d853d0386be20f11fae8699d4ea5cdb086c90390503ef486e94fd6756e5f99c +MISC ChangeLog 1184 SHA256 b0427be081124505e7b0890ae979922d5c0578eff983181ee3886850b3e6f731 SHA512 48c3c1f186306117ef9a171977984c46d9059347d5a7d481e6e610dc5f2631022d3cedcd703805dbadf00352c4847a50aa52168b8cd510ec047ef8530814a6ab WHIRLPOOL f7c3dd1fe2a4c6bfad72f7fd87b956dde73012bb3c769a9bd44f4ba8a8e873f4d27abfd72f1ce9a4f255fcd211ff85fa0ca61dc093cde5ce7ebcfe85b57a5c6f MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3 -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.19 (GNU/Linux) +Version: GnuPG v2.0 -iEYEAREIAAYFAlE+DJ4ACgkQgAnW8HDreRa+rACgonjsMZ7+r8UX5uhaKVljfWRt -S88AoKID5Pos6YxK4DlAgj7F2XwYgYLM -=HB9R +iQJ8BAEBCgBmBQJVf+CPXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w +ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQ0QUU0N0I4NzFERUI0MTJFN0EyODE0NUFF +OTQwMkE3OUIwMzUyOUEyAAoJEOlAKnmwNSmi99MP/iEAzH0RoIbLJZf3GgYFRYJ5 +2iOC/OCqH65y5Vn1nEe5QFHnys04iZ3q5B75EOvU0SXypZj5iyVJYwLIaSa4/row +EHdUNiXJW8kfd668ylwzlX2tBt89DTqmeDgD8sjs2n22xSvuGyYdVnmB6okLzunt +jzYUfQfvOk1q7+d5QlWMZmEDi6iEUrHqOcmdv2K2HrceDeQdjmsdx1asKQ5cYCzy +gVA4D6Wmqk4pwGLFjK7rljoIALQAvfwtltFSQkbPasZbzqjSPDrVRzpPNJdv95eS +/AeXTlLwSmg9Y8EKLQW8WYm4KOwH3upTPJ4eTPz21F/RuwBa+7fRiIsw+jT3OCGo 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08:38:38 jlec Exp $ EAPI=5 @@ -17,8 +17,9 @@ SLOT="0" IUSE="" KEYWORDS="~amd64 ~x86" -DEPEND="dev-libs/boost" -RDEPEND="${DEPEND}" +RDEPEND="dev-libs/boost" +DEPEND="${RDEPEND} + app-arch/cpio" S="${WORKDIR}/${P}-ncbi-blast-${MY_NCBI_BLAST_V}-src/c++" diff --git a/sci-biology/rmblast/rmblast-1.2.ebuild b/sci-biology/rmblast/rmblast-1.2.ebuild deleted file mode 100644 index ecdfa0b11571..000000000000 --- a/sci-biology/rmblast/rmblast-1.2.ebuild +++ /dev/null @@ -1,45 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rmblast/rmblast-1.2.ebuild,v 1.4 2013/02/18 10:48:11 jlec Exp $ - -EAPI="3" - -inherit eutils flag-o-matic toolchain-funcs - -MY_NCBI_BLAST_V=2.2.23+ - -DESCRIPTION="RepeatMasker compatible version of NCBI BLAST+" -HOMEPAGE="http://www.repeatmasker.org/RMBlast.html" -SRC_URI="http://www.repeatmasker.org/rmblast-${PV}-ncbi-blast-${MY_NCBI_BLAST_V}-src.tar.gz" - -LICENSE="OSL-2.1" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -DEPEND=">=dev-libs/boost-1.35.0" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/${P}-ncbi-blast-${MY_NCBI_BLAST_V}-src/c++" - -src_prepare() { - filter-ldflags -Wl,--as-needed - sed \ - -e 's/-print-file-name=libstdc++.a//' \ - -e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \ - -e "/DEF_FAST_FLAGS=/s:=\".*\":=\"${CFLAGS}\":g" \ - -i src/build-system/configure || die - epatch "${FILESDIR}"/${P}-gcc47.patch -} - -src_configure() { - tc-export CXX CC - - "${S}"/configure --without-debug \ - --with-mt \ - --without-static \ - --with-dll \ - --prefix="${ED}"/opt/${PN} \ - --with-boost="${EPREFIX}/usr/include/boost" \ - || die -} |