diff options
Diffstat (limited to 'sci-biology/biopython')
| -rw-r--r-- | sci-biology/biopython/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/biopython/Manifest | 10 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.59.ebuild | 55 |
3 files changed, 68 insertions, 6 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog index d8ebb4cc0485..2a44ae7bff76 100644 --- a/sci-biology/biopython/ChangeLog +++ b/sci-biology/biopython/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/biopython -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.66 2011/12/26 05:51:16 weaver Exp $ +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.67 2012/02/27 16:06:58 weaver Exp $ + +*biopython-1.59 (27 Feb 2012) + + 27 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.59.ebuild: + Version bump 26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.58.ebuild: Version bump diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index 4f64947133d8..2b33cd562ec4 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -4,14 +4,16 @@ Hash: SHA1 AUX biopython-1.51-flex.patch 782 RMD160 a69deb13b97f80ec6aed7ec7975e0de4846fe2fa SHA1 dad1c962a632efeccbbec61b79feb71abccbe030 SHA256 ad957b435fc70b218a7a65eb492b0eae5f82b7c6371d2f1451c9dd714fa056dc DIST biopython-1.57.tar.gz 6945024 RMD160 ae061442a97decbd9951af8f85913bbc3747ffee SHA1 dbbd23c9f555e0c69d61db96f8aa368617ecacef SHA256 07c16a86127770c8d5b653a6e82fee0999159f7284a3a01c98cf66ed2f0ec4a0 DIST biopython-1.58.tar.gz 8035063 RMD160 3e05426017e98cdc45cacfb08b1b5d7c3d4b10ff SHA1 3db0819d0046cfcd1c9aaf39aa7db40b9aa2645e SHA256 f9183facf01d3b0b489401f43a0cae8249c3dd1f7452d939f137980f5e683e73 +DIST biopython-1.59.tar.gz 8577492 RMD160 2d08fe70d131cd2a90019465a4f5f680b4c92da3 SHA1 dc8e9d76b208a2c2fcc8d4e10c7bbf0cc56dbbfd SHA256 588abf55de3d8e4deac611a0f810a9c5d9ce7e5868d3064f79efe6cabd18cacb EBUILD biopython-1.57.ebuild 1427 RMD160 8ace67eb6086526d1113b05f3019cd70f2c531ec SHA1 532b8fd3d6ecad7c3d64f1bbd908ab6afa6607aa SHA256 9fee7df9ef9f8e3cb8f83993f49daf855500be23cff8af268c3ca9ae4bf4a177 EBUILD biopython-1.58.ebuild 1430 RMD160 19420eed4ddfe66a4306dbde8540650d0dffc9ca SHA1 8242fc760d79753901ca515b9b7e79b9936bd1ff SHA256 45ccfb5d327c035bf09cc289914bf3fa8eab79dd775b8d97eef663b82b5135a3 -MISC ChangeLog 10535 RMD160 72e6763d6cd517bed234480618920e3b1d027e07 SHA1 7785c7ff07bc89c8713dec0ced9589d3df8a1291 SHA256 089d1ca26506a696b43d136dd07a6a84ac791a09515265bdb3ebb1316a1cec16 +EBUILD biopython-1.59.ebuild 1430 RMD160 2c9f0a75b2d87f481354df47861414612958930e SHA1 603395e3315df3191ad810c843d56bb15be1f705 SHA256 35f1b157cab647d60c5c473f7e8fd95cc1402678d796663be8a3402d78e5d68b +MISC ChangeLog 10656 RMD160 f0bb070a48552a333a4f345c855e8aa7b9f0d69a SHA1 c9b3bd0b34c74ad4dcf1f1667ba8674526305c8f SHA256 3b551736ef05d07f0f622ce9bca979d014eda7893b2e8f27d5ee19515c56a402 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (GNU/Linux) -iEYEARECAAYFAk74C1oACgkQ8xSwyhbn2Oa12gCcC7gKteqduh1qug3TBZLCzSSj -7SoAn2xIT18OtTyWqiulkjatky94xGPb -=kHKH +iEYEARECAAYFAk9LqigACgkQ8xSwyhbn2Oa2rgCeOV6PVsZD7WSWmcUUct6f1jqf +rTYAnAx+vh40M8l3XSSARfBqRgmWO3Mc +=qFIT -----END PGP SIGNATURE----- diff --git a/sci-biology/biopython/biopython-1.59.ebuild b/sci-biology/biopython/biopython-1.59.ebuild new file mode 100644 index 000000000000..1a4a7397c2ff --- /dev/null +++ b/sci-biology/biopython/biopython-1.59.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.59.ebuild,v 1.1 2012/02/27 16:06:59 weaver Exp $ + +EAPI=3 +PYTHON_DEPEND="2" +SUPPORT_PYTHON_ABIS="1" +RESTRICT_PYTHON_ABIS="3.* *-jython" + +inherit distutils eutils + +DESCRIPTION="Python modules for computational molecular biology" +HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/" +SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" + +LICENSE="as-is" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86" +IUSE="mysql postgres" + +RDEPEND=" + dev-python/numpy + dev-python/reportlab + mysql? ( dev-python/mysql-python ) + postgres? ( dev-python/psycopg )" +DEPEND="${RDEPEND} + sys-devel/flex" + +PYTHON_CFLAGS=("2.* + -fno-strict-aliasing") + +DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1" +DOCS="CONTRIB DEPRECATED NEWS README" +PYTHON_MODNAME="Bio BioSQL" + +src_prepare() { + distutils_src_prepare + epatch "${FILESDIR}/${PN}-1.51-flex.patch" +} + +src_test() { + testing() { + cd Tests + PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py + } + python_execute_function --nonfatal -s testing +} + +src_install() { + distutils_src_install + + insinto /usr/share/doc/${PF} + doins -r Doc/* || die "Installation of documentation failed" + insinto /usr/share/${PN} + cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed" +} |