10 files changed, 47 insertions, 26 deletions
diff --git a/sci-biology/bioperl-db/ChangeLog b/sci-biology/bioperl-db/ChangeLog
index e46952f72394..e2ef0cf61c71 100644
--- a/sci-biology/bioperl-db/ChangeLog
+++ b/sci-biology/bioperl-db/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/bioperl-db
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/ChangeLog,v 1.6 2011/07/18 06:30:29 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/ChangeLog,v 1.7 2011/09/20 22:17:36 mgorny Exp $
+
+  20 Sep 2011; Michał Górny <mgorny@gentoo.org> bioperl-db-9999-r1.ebuild:
+  Migrate to git-2.
 
 *bioperl-db-1.6.9 (18 Jul 2011)
 
diff --git a/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild b/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild
index 6ca45452a7d0..7da851565225 100644
--- a/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild
+++ b/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild
@@ -1,15 +1,16 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild,v 1.1 2010/10/17 22:13:33 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild,v 1.2 2011/09/20 22:17:36 mgorny Exp $
 
 EAPI="2"
 
-inherit perl-module git
+inherit perl-module git-2
 
 DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL schema"
 HOMEPAGE="http://www.bioperl.org/"
 SRC_URI=""
-EGIT_REPO_URI="git://github.com/bioperl/${PN}.git"
+EGIT_REPO_URI="git://github.com/bioperl/${PN}.git
+	https://github.com/bioperl/${PN}.git"
 
 LICENSE="Artistic GPL-2"
 SLOT="0"
diff --git a/sci-biology/bioperl-network/ChangeLog b/sci-biology/bioperl-network/ChangeLog
index 41c79755c356..c48217515764 100644
--- a/sci-biology/bioperl-network/ChangeLog
+++ b/sci-biology/bioperl-network/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bioperl-network
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-network/ChangeLog,v 1.6 2011/07/18 06:30:02 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-network/ChangeLog,v 1.7 2011/09/20 22:17:50 mgorny Exp $
+
+  20 Sep 2011; Michał Górny <mgorny@gentoo.org>
+  bioperl-network-9999-r1.ebuild:
+  Migrate to git-2.
 
 *bioperl-network-1.6.9 (18 Jul 2011)
 
diff --git a/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild b/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild
index 6265bcf5acc2..1285f677a4b3 100644
--- a/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild
+++ b/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild
@@ -1,15 +1,16 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild,v 1.1 2010/10/17 22:15:30 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild,v 1.2 2011/09/20 22:17:50 mgorny Exp $
 
 EAPI="2"
 
-inherit perl-module git
+inherit perl-module git-2
 
 DESCRIPTION="Perl tools for bioinformatics - Analysis of protein-protein interaction networks"
 HOMEPAGE="http://www.bioperl.org/"
 SRC_URI=""
-EGIT_REPO_URI="git://github.com/bioperl/${PN}.git"
+EGIT_REPO_URI="git://github.com/bioperl/${PN}.git
+	https://github.com/bioperl/${PN}.git"
 
 LICENSE="Artistic GPL-2"
 SLOT="0"
diff --git a/sci-biology/bioperl-run/ChangeLog b/sci-biology/bioperl-run/ChangeLog
index 07f848f889bc..85b0657ce99d 100644
--- a/sci-biology/bioperl-run/ChangeLog
+++ b/sci-biology/bioperl-run/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/bioperl-run
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.21 2011/07/18 06:30:59 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.22 2011/09/20 22:19:00 mgorny Exp $
+
+  20 Sep 2011; Michał Górny <mgorny@gentoo.org> bioperl-run-9999-r1.ebuild:
+  Migrate to git-2.
 
 *bioperl-run-1.6.9 (18 Jul 2011)
 
diff --git a/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild b/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild
index 2a306df4804b..25c5799d2ec3 100644
--- a/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild
+++ b/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild
@@ -1,15 +1,16 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild,v 1.1 2010/10/17 22:18:33 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild,v 1.2 2011/09/20 22:19:00 mgorny Exp $
 
 EAPI="2"
 
-inherit perl-module git
+inherit perl-module git-2
 
 DESCRIPTION="Perl tools for bioinformatics - Wrapper modules around key bioinformatics applications"
 HOMEPAGE="http://www.bioperl.org/"
 SRC_URI=""
-EGIT_REPO_URI="git://github.com/bioperl/${PN}.git"
+EGIT_REPO_URI="git://github.com/bioperl/${PN}.git
+	https://github.com/bioperl/${PN}.git"
 
 LICENSE="Artistic GPL-2"
 SLOT="0"
diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog
index c501c9d360ab..84fbd600a09e 100644
--- a/sci-biology/bioperl/ChangeLog
+++ b/sci-biology/bioperl/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/bioperl
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.48 2011/07/18 06:31:35 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.49 2011/09/20 22:15:18 mgorny Exp $
+
+  20 Sep 2011; Michał Górny <mgorny@gentoo.org> bioperl-9999-r1.ebuild:
+  Migrate to git-2.
 
 *bioperl-1.6.9 (18 Jul 2011)
 
diff --git a/sci-biology/bioperl/bioperl-9999-r1.ebuild b/sci-biology/bioperl/bioperl-9999-r1.ebuild
index bed16f097e60..9145d5d6a83b 100644
--- a/sci-biology/bioperl/bioperl-9999-r1.ebuild
+++ b/sci-biology/bioperl/bioperl-9999-r1.ebuild
@@ -1,17 +1,18 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999-r1.ebuild,v 1.1 2010/10/17 22:06:04 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999-r1.ebuild,v 1.2 2011/09/20 22:15:18 mgorny Exp $
 
 EAPI="2"
 
-inherit perl-module git
+inherit perl-module git-2
 
 SUBPROJECTS="+db +network +run"
 
 DESCRIPTION="Perl tools for bioinformatics - Core modules"
 HOMEPAGE="http://www.bioperl.org/"
 SRC_URI=""
-EGIT_REPO_URI="git://github.com/${PN}/${PN}-live.git"
+EGIT_REPO_URI="git://github.com/${PN}/${PN}-live.git
+	https://github.com/${PN}/${PN}-live.git"
 
 LICENSE="Artistic GPL-2"
 SLOT="0"
diff --git a/sci-biology/bioruby/ChangeLog b/sci-biology/bioruby/ChangeLog
index c214870f46f1..ad0754b3a30e 100644
--- a/sci-biology/bioruby/ChangeLog
+++ b/sci-biology/bioruby/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/bioruby
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioruby/ChangeLog,v 1.12 2009/09/21 22:17:30 maekke Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioruby/ChangeLog,v 1.13 2011/09/20 22:11:00 mgorny Exp $
+
+  20 Sep 2011; Michał Górny <mgorny@gentoo.org> bioruby-9999.ebuild:
+  Migrate to git-2.
 
   21 Sep 2009; Markus Meier <maekke@gentoo.org> bioruby-1.3.1.ebuild:
   amd64/x86 stable, bug #285626
diff --git a/sci-biology/bioruby/bioruby-9999.ebuild b/sci-biology/bioruby/bioruby-9999.ebuild
index 7b2901a24b56..779ec4a80a8d 100644
--- a/sci-biology/bioruby/bioruby-9999.ebuild
+++ b/sci-biology/bioruby/bioruby-9999.ebuild
@@ -1,12 +1,13 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioruby/bioruby-9999.ebuild,v 1.1 2009/09/19 21:41:54 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioruby/bioruby-9999.ebuild,v 1.2 2011/09/20 22:11:00 mgorny Exp $
 
 EAPI="2"
 
-EGIT_REPO_URI="git://github.com/bioruby/bioruby.git"
+EGIT_REPO_URI="git://github.com/bioruby/bioruby.git
+	https://github.com/bioruby/bioruby.git"
 
-inherit ruby git
+inherit ruby git-2
 
 DESCRIPTION="An integrated environment for bioinformatics using the Ruby language"
 LICENSE="Ruby"