Version Bump

Package-Manager: portage-2.2.0_alpha54/cvs/Linux x86_64

4 files changed, 86 insertions, 10 deletions

diff --git a/sci-chemistry/ccp4/Manifest b/sci-chemistry/ccp4/Manifest
index 5f6416ac5bec..567d7c0b8084 100644
--- a/sci-chemistry/ccp4/Manifest
+++ b/sci-chemistry/ccp4/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA512
 
 AUX 6.0.1-dont-make-dirs-in-configure.patch 2790 RMD160 904e37ab1ea20dda50f50ce8780268eb5fa52480 SHA1 f8989cb867c92def86ccd88b4d67f38578d5d80b SHA256 2dbf78513ef94d88e446042e969644ad8a8462a22e80105e7481af93003a18bf
 AUX 6.0.1-ppc-double-define-gerror.patch 424 RMD160 4f012233446fffa61e8d775a19a0dacea4ae2234 SHA1 209fa1bdf1e59b4055177e343b69e487d9183fb3 SHA256 09c2c1e0176bee94673b21609b2b00118b2bb4f5942f3feb35c64c61c99ebc61
@@ -43,14 +43,14 @@ DIST util_windows.tcl-r1.27-r1.27.2.1.diff 1486 RMD160 06b5598bcff7da11e19ec62c7
 EBUILD ccp4-6.0.1-r1.ebuild 13789 RMD160 55b973cdf387fd872fa991f613428b382178d67b SHA1 5627c990d854dc9ea6846158afa56cdd65aaa56f SHA256 4bd959e375f2213f00183c2ca01e0f2221f739079ecb7148fed85cd14355e3e5
 EBUILD ccp4-6.0.2-r1.ebuild 14198 RMD160 4cdec53ee322218e1bff17d4c4559a5f9e5d8598 SHA1 c16336ea7a8c8b0cab4312c1486025d3f2f9ee4a SHA256 a4973d5a3576dd4bb1b72dbae7688eebfee6cc3fd64607c0f93c73f4d85c3787
 EBUILD ccp4-6.0.2.ebuild 13342 RMD160 7288dc466b936b96bd19c68d40f85ea398aeca77 SHA1 eaf8d35e25453add3d15280434444d4c1436bd8d SHA256 729b78d3aa72e18b2f2f4adaf6aed539822501dc772b919526ca893fbb72bfd8
-EBUILD ccp4-6.1.3-r1.ebuild 1004 RMD160 2fdd3dc67c66151ea6402788622f63099e33c8c8 SHA1 2bf6345595f9724833b6402db49c911c6763685a SHA256 ec24e7e7e86546289ccb6dad115e4dc8b016e80b74b031e304c60a21e8373974
+EBUILD ccp4-6.1.3-r1.ebuild 1028 RMD160 d7941e705ff80cc3f7377a6dce9f473e213ca014 SHA1 06fdad917820a5dd1fad046d378f7f03fbc16293 SHA256 965d6c8389ce90d8b860b41aba0bc4a16a44c49095be946cef71d03d4008232f
 EBUILD ccp4-6.1.3.ebuild 876 RMD160 504ea3f3bf8f9b632db13881fbae8766f7c4e006 SHA1 ffffabbdce89df262e8ff6a46b4345ef44c3f84b SHA256 aa442df333913073514bb2e09987943d4aad8c0557f2046b962931eae3fcb883
-MISC ChangeLog 5367 RMD160 8144784af2cf2a4168251e9384c19e636fbe4558 SHA1 7159d78cb08c2dd5acb0c2bc017aeb099ce04e30 SHA256 7f447c61c10d626c54bb5623ce95a8db0cb8a7ea6d1d4b38b33c40ef0733873d
-MISC metadata.xml 311 RMD160 7773ed578c7688537f2cf40b5417f9712fe84d8c SHA1 cd3e212d34f7c968d06bab6a2bc64e223b232b3e SHA256 1c5a8d16813aba13725a331bb6d0ed0d2a3bc4d0942775ceced4dc0a7fe4b653
+MISC ChangeLog 5487 RMD160 44014e3b2a0596482be40b40e14424b2e5de7f0b SHA1 aece48b8f6af4453dabc3a65a29a998421519132 SHA256 0aac1aa374dcb97df26c214bae7f1765c4ec52575a4fb436132542a372e2d9bf
+MISC metadata.xml 316 RMD160 72738bd922f0a58192b1bceda4889755f9544180 SHA1 c7b73f171cb2da86b037cd747072bc07a69607bf SHA256 1aad7ad115d13781f8bf4eef6a35910e512f74b9d38397816bd6fcdfead864e4
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.17 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
-iEYEARECAAYFAk4AwUAACgkQgAnW8HDreRa7SgCgomUNk1nAMtegsSmA8KQ8fbMt
-MokAoLVAY6blbp8FcabnpWG0i4/hMezo
-=a4MZ
+iEYEAREKAAYFAk5nnxAACgkQgAnW8HDreRYQ5QCfQjl63aMX4rShNxEsXsOdef8Q
+xIQAoMFoabtVvaA8rBjDKukfTjleBhCa
+=9god
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/molrep/ChangeLog b/sci-chemistry/molrep/ChangeLog
index 6edd0f6248f4..59cc4096e09b 100644
--- a/sci-chemistry/molrep/ChangeLog
+++ b/sci-chemistry/molrep/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/molrep
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molrep/ChangeLog,v 1.18 2011/07/02 08:55:01 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molrep/ChangeLog,v 1.19 2011/09/07 16:40:39 jlec Exp $
+
+*molrep-11.0.03 (07 Sep 2011)
+
+  07 Sep 2011; Justin Lecher <jlec@gentoo.org> +molrep-11.0.03.ebuild:
+  Version Bump
 
   02 Jul 2011; Justin Lecher <jlec@gentoo.org> molrep-11.0.02.ebuild,
   metadata.xml:
diff --git a/sci-chemistry/molrep/Manifest b/sci-chemistry/molrep/Manifest
index fab95ece7ace..d98cb45f06d7 100644
--- a/sci-chemistry/molrep/Manifest
+++ b/sci-chemistry/molrep/Manifest
@@ -1,7 +1,19 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA512
+
 AUX 10.2.35-respect-FLAGS.patch 2368 RMD160 4f24b345f0c78de0c0222abfef987d61fe1356d0 SHA1 bc445d646208de7e879a5989b66296fd89b2fc96 SHA256 809d9f290a1eb59b8fc5904328e72c30b65d3be821a61a1bff050bc446bdc991
 AUX 11.0.00-respect-FLAGS.patch 364 RMD160 b364dfd896cd954740960eb32c15f47e9c2cdffd SHA1 50e945f5f6f8b0785547c2bebeea26f93421bb39 SHA256 04a8fbd74b3f9280fbb7d5abe701cee5f59901c258afdfc16b4d37809200c461
 AUX 11.0.00-test.patch 5153 RMD160 70dabd2f772cbcad4c8cd1ea617838a6a1b61f55 SHA1 b3b66bcb1661a1fcd3c7700310dda4a1642293c3 SHA256 f057baee3a42a3a517199c039018d8042d4da098976636950871d650e6d5acd1
 DIST molrep-11.0.02.tar.gz 3594084 RMD160 d4238e39a21aa6c7b3373a8db243c54f817e4408 SHA1 f54becab42f5a484a33e11e3c8515d8bed37a880 SHA256 6acb00bc91ad76027461ce6055eda72c8de34e5243449a31d5ede9e537e9adce
+DIST molrep-11.0.03.tar.gz 3643087 RMD160 fce47895d194db79c2b5b32ccc7b6f87779dc0c8 SHA1 a6af659714a9df2b658811f853880602df85bae6 SHA256 f4c317713b0dddf0ca883734f0bfe27600b50f8d4dd354ea8ae8245e21ce4392
 EBUILD molrep-11.0.02.ebuild 1321 RMD160 57658320e01c25d541111e696673ac53cb15b3f9 SHA1 dd02dccd6159e89fcbb62947de7254a2fbe28239 SHA256 37b5a21b9933ac19b5fc4c2f2b9551d84c2cd3359ef9f300b5c93d505f582a8d
-MISC ChangeLog 2488 RMD160 455d37224b34de71cab947e993bf6fcd9320124c SHA1 f14ac9dff671e112e46d16f7320932697c3deae9 SHA256 7e0d1e1ad94fb769882e33825790952eaafad585f1dd7525bf9a6c7c703516a4
+EBUILD molrep-11.0.03.ebuild 1396 RMD160 4732300b9e46d5ec710751712d037d5e732c26bd SHA1 a358cfe0404f87a0ecefdcaecaf9efa20315f1d3 SHA256 7ade7d97df43efbbf799a5b5fd09d5e372d089c83a79a862595c4f3f17ca7e9a
+MISC ChangeLog 2606 RMD160 858a9b0ef0fb53135074aed8046241437d100204 SHA1 5176a02f19053d37dc29d3fa73682e171f835291 SHA256 0be96595d02d9f8c92e22eda339f6f7eaf4a9c56130a7a28b54b3e264065df15
 MISC metadata.xml 229 RMD160 e5d681054ef371ecfe4d6828e8b722b716968b37 SHA1 e91b223d4c687993ccca1be424e4feedad208570 SHA256 0f110645272f37341c3729c03cf88dbb871ed82db98c8b0dbda8734343b88567
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.18 (GNU/Linux)
+
+iEYEAREKAAYFAk5nnokACgkQgAnW8HDreRY95wCgy+hbtZsggTrPMhT4MeU7tuVO
+K54AoNHfBJhUGt/TJkLVruUsVvVniuOu
+=eF/N
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/molrep/molrep-11.0.03.ebuild b/sci-chemistry/molrep/molrep-11.0.03.ebuild
new file mode 100644
index 000000000000..d01988129d41
--- /dev/null
+++ b/sci-chemistry/molrep/molrep-11.0.03.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molrep/molrep-11.0.03.ebuild,v 1.1 2011/09/07 16:40:38 jlec Exp $
+
+EAPI=4
+
+inherit eutils flag-o-matic fortran-2 multilib toolchain-funcs
+
+DESCRIPTION="molecular replacement program"
+HOMEPAGE="http://www.ysbl.york.ac.uk/~alexei/molrep.html"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.gz"
+
+LICENSE="ccp4"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="
+	virtual/fortran
+
+	>=sci-libs/ccp4-libs-6.1.3
+	sci-libs/mmdb
+	virtual/lapack"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}/${PN}"
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/11.0.00-respect-FLAGS.patch \
+		"${FILESDIR}"/11.0.00-test.patch
+	[[ $(tc-getFC) =~ gfortran ]] && append-fflags -fno-second-underscore
+}
+
+src_compile() {
+	cd "${S}"/src
+	emake clean
+	emake \
+		MR_FORT="$(tc-getFC) ${FFLAGS}" \
+		FFLAGS="${FFLAGS}" \
+		LDFLAGS="${LDFLAGS}" \
+		MR_LIBRARY="-L${EPREFIX}/usr/$(get_libdir) -lccp4f -lccp4c $(pkg-config --libs mmdb lapack) -lccif -lstdc++ -lm"
+}
+
+src_test() {
+	export MR_TEST="${S}/bin/"
+	cd "${S}"/molrep_check/work
+	mkdir out scr
+	cp ../*.bat .
+	bash em.bat || die
+	bash mr.bat || die
+}
+
+src_install() {
+	exeinto /usr/libexec/ccp4/bin/
+	doexe bin/${PN}
+	dosym ../libexec/ccp4/bin/${PN} /usr/bin/${PN}
+	dodoc readme doc/${PN}.rtf
+}