[sci-chemistry/gamess] Version bump. Thanks to Wilhelm Eger

Package-Manager: portage-2.2.0_alpha41/cvs/Linux x86_64

5 files changed, 449 insertions, 1742 deletions

diff --git a/sci-chemistry/gamess/ChangeLog b/sci-chemistry/gamess/ChangeLog
index a28f95c02e85..10c22ca49b91 100644
--- a/sci-chemistry/gamess/ChangeLog
+++ b/sci-chemistry/gamess/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-chemistry/gamess
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamess/ChangeLog,v 1.49 2011/01/23 12:42:58 alexxy Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamess/ChangeLog,v 1.50 2011/06/17 10:58:11 alexxy Exp $
+
+*gamess-20101001.3 (17 Jun 2011)
+
+  17 Jun 2011; Alexey Shvetsov <alexxy@gentoo.org>
+  -gamess-20101001.1-r1.ebuild, -files/gamess-20101001.1.gentoo.patch,
+  +gamess-20101001.3.ebuild, +files/gamess-20101001.3.gentoo.patch:
+  Version bump. Thanks to Wilhelm Eger
 
 *gamess-20101001.1-r1 (23 Jan 2011)
 
diff --git a/sci-chemistry/gamess/Manifest b/sci-chemistry/gamess/Manifest
index 392490971247..39c00e92d8eb 100644
--- a/sci-chemistry/gamess/Manifest
+++ b/sci-chemistry/gamess/Manifest
@@ -1,28 +1,28 @@
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 Hash: SHA256
 
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+AUX gamess-20101001.3.gentoo.patch 15443 RMD160 8878d81b1aacbfe285207cc9e09b0cc2483445ba SHA1 1deedad5156097d195adb6061c39f46b39176e1d SHA256 2da43dac3c2a720dc6340e1bf29079da84c08e9dbbd1cbe899c523ecac58ff35
 AUX gamess-neo-fix.patch 824 RMD160 66e303dd6912150c262d6c00eadb6ac40e5520e6 SHA1 20feb714ec61c23b184ad2a2ddc64517b5e5cabf SHA256 2dafa7af0f6d2872f2e274d36c373735cedd0889a41ab6a175cbf22f7e850452
 AUX gamess-qmmm-tinker-fix-idate.patch 611 RMD160 cdcf164d80f36db3a631659d85b7e099118c971d SHA1 3e29aed5b0933ebe598f8d2c9d7315c4f48da0be SHA256 db62d639b96f64493754baa5565322ff21b295e8abee40fca270d9c95dfaa435
-DIST gamess-20101001.1.tar.gz 16029694 RMD160 8730ac02b1e9f6a9e6c90caf507fc8b65a7bc79f SHA1 3a38b8d96db4195755ad3aabc12d018288a37ce4 SHA256 346ce85cb9580fce770c28a2ba15c43a7258f4af4fbeda1e5ce5330e459e49f1
+DIST gamess-20101001.3.tar.gz 21075234 RMD160 f1b46bb51a74de8a6c60d2caa9b0840573b9b372 SHA1 1840046e1fb50cea41b13e925130f450b5075cd9 SHA256 e34285fb20df26c78744a09dbeba34554b85b92f8138a022e2a156a1776e6e3b
 DIST tinker.tar.Z 1902051 RMD160 b467fe3231d469309c1d48d29ee15975a3f305c0 SHA1 e1e9fde440de1854a8b49b6ae2259df27e871651 SHA256 7c52454ade7dd81d1b70a7e7722eda3672c644a3ba67ab444824a0212b4a7a8c
-EBUILD gamess-20101001.1-r1.ebuild 10047 RMD160 cb2a45089e646027657e474062d42908b1ef101e SHA1 e34443acc1f85f47e268100db77b201e82fcaae5 SHA256 20791302639fc479177ac0867e47bd1e09fdd6dd94f7282f29be0d7fd612222a
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diff --git a/sci-chemistry/gamess/files/gamess-20101001.1.gentoo.patch b/sci-chemistry/gamess/files/gamess-20101001.1.gentoo.patch
deleted file mode 100644
index 8b2a0899b1b5..000000000000
--- a/sci-chemistry/gamess/files/gamess-20101001.1.gentoo.patch
+++ /dev/null
@@ -1,1718 +0,0 @@
-diff -urN gamess.orig/comp gamess/comp
---- gamess.orig/comp	2010-08-05 19:04:54.000000000 +0400
-+++ gamess/comp	2010-12-07 20:29:13.000000000 +0300
-@@ -1390,7 +1390,7 @@
- #   g77 does not support FORTRAN logical units above 99, or 128 bit math.
- #
-    case g77:
--   set OPT = '-O2'
-+   set gentoo-OPT = '-O2'
-    if ($MODULE == ormas1) set OPT='-O2 -fno-move-all-movables' # RH9, g77 3.3
-    if ($MODULE == zheev)  set OPT='-O0'  # defensive compiling
-    if (($MODULE == qeigen) || ($MODULE == int2c)) then
-@@ -1420,7 +1420,7 @@
- #      -std=legacy  suppresses warnings about use of f77 constructs.
- #
-    case gfortran:
--   set OPT='-O2'
-+   set gentoo-OPT = '-O2'
-    if ($MODULE == zheev)  set OPT='-O0'  # defensive compiling
-    if ($MODULE == pcmcv2) set OPT='-O1'  # EFP+CPCM, ala Francois, v4.1.2
-    if (($MODULE == qeigen) || ($MODULE == int2c)) then
-@@ -1446,7 +1446,7 @@
- #    optimizations in 32 bit mode, as a function of the ifort version.
- #
-    case ifort:
--   set OPT = '-O3'
-+   set gentoo-OPT = '-O2'
-    if ($MODULE == delocl) set OPT='-O0'  # from Cheol
-    if ($MODULE == zheev)  set OPT='-O0'
-    set echo
-@@ -1558,7 +1558,7 @@
-    case gfortran:
- #           -finit-real=<zero|inf|-inf|nan>  could be interesting debug opt
- #           -fno-automatic forces static storage of all local variables
--      set OPT='-O2'
-+      set gentoo-OPT = '-O2'
-       if ($MODULE == zheev)  set OPT='-O0'  # defensive compiling
-       if (($MODULE == qeigen) || ($MODULE == int2c)) then
-          mv -f $MODULE.f $MODULE.junk
-@@ -1587,7 +1587,7 @@
- #     -WB means warn but don't fail on out-of-bounds array references
- #     -ftz flushes underflow results to zero
- #
--      set OPT = '-O2'
-+      set gentoo-OPT = '-O2'
-       if ($MODULE == guess)  set OPT='-O0' # 10.0, exam39
-       if ($MODULE == locpol) set OPT='-O1' # 10.0, makefp/gmres
-       if ($MODULE == morokm) set OPT='-O0' # Jan Fredin
-diff -urN gamess.orig/compall gamess/compall
---- gamess.orig/compall	2010-10-01 19:37:31.000000000 +0400
-+++ gamess/compall	2010-12-07 20:21:55.000000000 +0300
-@@ -84,15 +84,14 @@
-    endif
- endif
- if ($TARGET == linux32)      set extraflags='-DLINUX32'
--if ($TARGET == linux64)      then
-+if ($TARGET == linux64) then
-+	set chip=`uname -m`
- #      Ubuntu uses the non-standard -m flag, its -p replies "unknown"
--                         set chip=`uname -p`
--   if ($chip == unknown) set chip=`uname -m`
--   if ($chip == x86_64) set extraflags='-DLINUX64 -m64'
--   if ($chip == ia64)   set extraflags='-DLINUX64'  # this always 64 bits
-+   	if ($chip == x86_64) set extraflags='-DLINUX64 -m64'
-+   	if ($chip == ia64)   set extraflags='-DLINUX64'  # this always 64 bits
- endif
- if ($TARGET == mac32)        set extraflags='-DLINUX32'
--if ($TARGET == mac64)    set extraflags='-DLINUX64 -m64 -I/usr/include/malloc'
-+if ($TARGET == mac64)        set extraflags='-DLINUX64 -m64 -I/usr/include/malloc'
- if ($TARGET == necsx)        set extraflags='-DNECSX -size_t64'
- if ($TARGET == sgi32)        set extraflags='-DSGI32 -n32'
- if ($TARGET == sgi64)        set extraflags='-DSGI64 -64'
-diff -urN gamess.orig/ddi/compddi gamess/ddi/compddi
---- gamess.orig/ddi/compddi	2010-06-24 02:35:20.000000000 +0400
-+++ gamess/ddi/compddi	2010-12-07 20:21:55.000000000 +0300
-@@ -628,7 +628,7 @@
- 
-      set FORTRAN=$GMS_FORTRAN   # might be g77, gfortran, ifort, pgf77, f2c
- 
--     set CC = 'gcc'
-+     set gentoo-CC = 'gcc'
-      set CFLAGS = "-DLINUX -O3 -fstrict-aliasing -I./"
-      set CLIBS  = "-lpthread"
- 
-@@ -681,7 +681,7 @@
-                              set ARCH='-m64'
-      if (`uname -p` == ia64) set ARCH=''
- 
--     set CC = 'gcc'
-+     set gentoo-CC = 'gcc'
-      set CFLAGS = "-DLINUX $ARCH -O3 -fstrict-aliasing -I./"
-      set CLIBS  = "-lpthread"
- 
-diff -urN gamess.orig/ddi/compddi.orig gamess/ddi/compddi.orig
---- gamess.orig/ddi/compddi.orig	1970-01-01 03:00:00.000000000 +0300
-+++ gamess/ddi/compddi.orig	2010-06-24 02:35:20.000000000 +0400
-@@ -0,0 +1,1313 @@
-+#!/bin/csh
-+#
-+#  23 Jun 10 - script to compile the Distributed Data Interface (DDI)
-+#
-+#     This produces a library 'libddi.a' which GAMESS links against,
-+#     and perhaps, a process kickoff program called 'ddikick.x' and
-+#     perhaps a test program 'ddi_test.x'.
-+#
-+if (-e install.info) then
-+   source install.info
-+else if (-e ../install.info) then
-+   source ../install.info
-+else
-+   echo "Please run 'config' first, to set up GAMESS compiling information"
-+   exit 4
-+endif
-+#
-+#  the configuration file read just above provides the next two variables,
-+#  and several other GMS_XXX values that will be used further down.
-+#
-+set TARGET=$GMS_TARGET
-+chdir $GMS_PATH/ddi
-+#
-+#  The following "numbers" make decisions based on 'config' values,
-+#  such as the machine target, and communication layer.
-+#  A human might want to review some of these selections, but if you
-+#  don't understand something, leave it alone.
-+#
-+#  1. Choose DDI communication layer, the only legal values are
-+#              sockets,mixed,mpi,shmem,lapi,armci
-+#     Please note that the correct choice is very often "sockets"!
-+#
-+#     Use 'sockets' if a TCP/IP stack is available.
-+#                   Choosing 'sockets' will produce a process kickoff
-+#                   program 'ddikick.x', as well as the DDI library.
-+#                   Every Unix has TCP/IP for its Ethernet, and "sockets"
-+#                   is an highly rational choice for Ethernet clusters.
-+#     Use 'mixed' or 'mpi' for MPI-based high performance networks.
-+#           'mixed' uses almost entirely MPI-1 calls, but uses a few
-+#                   TCP/IP sockets to avoid some of MPI's polling, often
-+#                   resulting in better wall clock times than 100% MPI.
-+#             'mpi' runs use 100% MPI-1 calls, but this often bogs down
-+#                   in polling, and can be much slower than 'mixed'.
-+#                         Read about MPI in ~/gamess/ddi/readme.ddi
-+#                         before choosing either 'mixed' or 'mpi'.
-+#     Use    'lapi' only on the IBM SP platform.
-+#     Use   'armci' for the IBM Blue Gene/L platform.
-+#     Use     'mpi' for the IBM Blue Gene/P platform.
-+#     Use     'mpi' for the Cray XT series.
-+#     Use     'mpi' for the SGI Altix or ICE, with its 'mpt' MPI library.
-+#     Use   'shmem' for the Cray X1 or X2 vector systems.
-+#     Use   'shmem' for the SGI Origin.
-+#
-+#     Clusters should use TCP/IP sockets on networks up to and including GE,
-+#     but probably should use 'mpi' or 'mixed' on networks like Infiniband.
-+#
-+#  As of April 2010, 'config' usually sets GMS_DDI_COMM to 'sockets'.
-+#        However, target 'linux64' may set GMS_DDI_COMM to 'mpi',
-+#  along with collecting information about which flavor of mpi, where
-+#  it is located, and so forth.  
-+#  Thus IB clusters, presuming they do not select openMPI, should work.
-+#                                
-+set COMM = $GMS_DDI_COMM
-+#
-+#     high end machines are just hardwired as follows.  Don't change them.
-+#
-+if ($TARGET != ibm-bg) set GMS_BG_MODEL=" "
-+if ($TARGET != ibm-bg) set GMS_ARMCI_PATH=" "
-+#
-+if  ($TARGET == cray-xt)                         set COMM=mpi
-+if (($TARGET == ibm-bg) && ($GMS_BG_MODEL == L)) set COMM=armci
-+if (($TARGET == ibm-bg) && ($GMS_BG_MODEL == P)) set COMM=mpi
-+if  ($TARGET == ibm64-sp)                        set COMM=lapi
-+if  ($TARGET == cray-x1)                         set COMM=shmem
-+if  ($TARGET == sgi64)                           set COMM=shmem
-+
-+#  2. DDI node sizes
-+#     a. Maximum number of processors (cores) in your SMP enclosures
-+#     b. Maximum number of nodes (number of physical SMP enclosures)
-+#     It is OK if these values are a little larger than your system,
-+#     but a serious error if they are smaller!
-+#
-+set MAXCPUS  = 8
-+set MAXNODES = 128
-+#
-+if ($TARGET == cray-xt) then
-+   set MAXCPUS=8
-+   set MAXNODES=1024 # bump one or both of these to match your XT
-+endif
-+
-+if ($TARGET == ibm-bg) then
-+   if ($GMS_BG_MODEL == L) then
-+      set MAXCPUS=2
-+      set MAXNODES=1024 # bump to match your BG/L
-+   endif
-+   if ($GMS_BG_MODEL == P) then
-+      set MAXCPUS=4
-+      set MAXNODES=4096 # bump to match your BG/P
-+   endif
-+endif
-+
-+#  3. Use System V-style shared-memory
-+#        Please see the file readme.ddi for checking and changing
-+#        System V shared memory/IPC limits for your particular OS.
-+#        Turn System V memory off if:
-+#        1) if you are unable to adjust system limits to higher values,
-+#           which requires cooperation from the 'root' account.
-+#        2) on some systems with micro-kernels, SysV may be taboo.
-+#        3) if SysV is just missing, e.g. in Cygwin under Windows.
-+#
-+set SYSV = true
-+if ($TARGET == ibm-bg)   set SYSV=false
-+if ($COMM == armci)      set SYSV=false
-+if ($TARGET == win32)    set SYSV=false
-+if ($TARGET == win64)    set SYSV=false
-+
-+#  5.    If you are unable to compile the new DDI source code, in case
-+#        your operating system is very old (e.g. > 10 years) you might
-+#        choose to compile the original version of DDI by picking 'old'.
-+#        The execution script 'rungms' will need to use the old syntax
-+#        for ddikick.x, see 'readme.ddi' and inside that script.
-+#
-+set DDI_SOURCE=new
-+
-+#  6. If using MPI, select the path to the include file mpi.h
-+#     This part is for Linux clusters, where there are many different
-+#     MPI libraries, and they may be installed almost anywhere.
-+#
-+#     For example, Intel MPI version 3.2 installed at the default
-+#     place would want to define something like
-+#        set MPI_INCLUDE_PATH = '/opt/intel/impi/3.2/include64'
-+#     Other scripting changes related to compiling and linking for
-+#     an MPI library are the "fge hack" in 'comp', and setting up
-+#     the message libraries in 'lked'.
-+#     Execution of GAMESS over MPI is left up to the user's ability
-+#     to modify 'rungms', based on the information about each MPI
-+#     contained in 'readme.ddi'!
-+#
-+set MPI_INCLUDE_PATH = ''
-+#
-+#           big iron knows where its MPI is going to be found, below.
-+if ($TARGET == ibm-bg)  goto skip_mpi_setup
-+if ($TARGET == cray-xt) goto skip_mpi_setup
-+#
-+#   This is the end of the user selectable "numbered" options!
-+#
-+#
-+# ------------------------------------------------------------------------- #
-+# Troubleshooting -- If you should run into any errors while compiling,
-+# check the following lists of common failures.
-+#
-+# 1) socklen_t is not defined.  Uncomment the following line.
-+#    set SOCKLEN_T = "-Dsocklen_t=int"
-+#
-+# 2) turn on debugging output.  set DEBUG_LEVEL to the level of debugging.
-+#    0 ==> Debugging (e.g. arg checking) compiled in, but no extra output.
-+#          Note that 0 selects more debugging than the normal compilation.
-+#    1 ==> Minimum debugging output.
-+#    5 ==> Standard debugging output.
-+#   10 ==> Significantly more output.
-+#   15 ==> Even more ... probably best to avoid this one.
-+#    One can also call DDI_DEBUG(level) to set the desired level
-+#    around a troublesome piece of code.
-+#    Uncomment the following line to enable more argument checking:
-+#
-+#    set DEBUG_LEVEL=0
-+#
-+# 3) If you want debugging output from only a particular CPU.
-+#    set DEBUG_CPU=RANK
-+#    set DEBUG_CPU=0
-+#
-+# 4) To make all point to point send/recv messages fully synchronous,
-+#    add the flag "-DSOC_SYNC" somewhere below, if TCP/IP, of course.
-+#
-+# ------------------------------------------------------------------------- #
-+
-+# ------------------------------------------------------------------------- #
-+# Here is an index of the options that can be defined to the C compiler
-+#
-+# -DDDI_SOC  -- use sockets; requires ddikick if mpi is not used.
-+# -DDDI_MPI  -- use MPI; must be kicked off with MPI kickoff;
-+#               assumes 1:1 mapping of compute processes and data servers
-+# -DDDI_LAPI -- use LAPI for distributed data operations; kickoff using
-+#               the poe command; NO data servers
-+# -DUSE_SYSV -- make use of System V shared-memory
-+#
-+# -DMACHINE              -- defines the target architecture
-+# -D_32_BIT              -- specifies a 32-bit machine (64-bit default)
-+# -DINT_SIZE=(int,long)  -- defines the size of a FORTRAN integer
-+# -D_UNDERSCORES=(0,1,2) -- number of underscores on a FORTRAN object
-+# -DF77_UPPERCASE        -- use UPPERCASE names for FORTRAN objects
-+#
-+# ------------------------------------------------------------------------- #
-+
-+
-+echo "       Building the Distributed Data Interface library"
-+echo "           started at `date`"
-+echo " "
-+if ($DDI_SOURCE == new) then
-+   echo "Compiling for machine type $TARGET,"
-+   echo "using communication model $COMM,"
-+   echo "System V shared memory option set $SYSV,"
-+   echo "with maxima of $MAXCPUS processors/node and $MAXNODES nodes."
-+else
-+   echo "Note, using DDI version 1 source code, for machine $TARGET."
-+endif
-+echo " "
-+echo "This compilation should produce the DDI library libddi.a"
-+#
-+if ($COMM == sockets) \
-+echo "This compilation should also produce the kick-off program ddikick.x"
-+#
-+echo " "
-+#
-+if (($GMS_DDI_COMM == mpi) || ($GMS_DDI_COMM == mixed)) then
-+   switch ($GMS_MPI_LIB)
-+     case impi:
-+        set MPI_INCLUDE_PATH = "$GMS_MPI_PATH/include64"
-+        breaksw
-+     case mpich2:
-+     case mvapich2:
-+     case myrinet:
-+     case openmpi:
-+     case mpt:
-+        set MPI_INCLUDE_PATH = "$GMS_MPI_PATH/include"
-+        breaksw
-+#            MicroSoft MPI uses a compiler flag, set below, not a pathname
-+     case msmpi:
-+        if($GMS_FORTRAN == pgf77) set MPI_INCLUDE_PATH = " "
-+        goto skip_mpi_setup
-+        breaksw
-+     default:
-+        echo "unknown MPI software requested"
-+        exit 4
-+        breaksw
-+   endsw
-+#         Double check that a valid path to MPI was provided.
-+#         Checking omitted in comp/lked as probably compddi will be run 1st.
-+   if (-e $MPI_INCLUDE_PATH/mpi.h) then
-+      echo "The MPI-1 software library to be used is $GMS_MPI_LIB,"
-+      echo "with the include file 'mpi.h' at $MPI_INCLUDE_PATH"
-+   else
-+      echo "Something is wrong with your MPI definitions in 'config',"
-+      echo "since there is no such file $MPI_INCLUDE_PATH/mpi.h"
-+      exit 4
-+   endif
-+endif
-+#
-+skip_mpi_setup:
-+
-+echo " "
-+
-+# ------------- set options forced by the choices made above ------------- #
-+
-+# --------------------- #
-+# Communication Options #
-+# --------------------- #
-+  if($COMM == sockets) then
-+     set DDI_COMM = '-DDDI_SOC'
-+  endif
-+
-+  if($COMM == mixed) then
-+     set DDI_COMM = '-DDDI_MPI -DDDI_SOC'
-+  endif
-+
-+  if($COMM == mpi) then
-+     set DDI_COMM = '-DDDI_MPI'
-+  endif
-+
-+  if($COMM == lapi) then
-+     set DDI_COMM = '-DDDI_MPI -DDDI_LAPI'
-+  endif
-+
-+  if($COMM == shmem) then
-+     set DDI_COMM = ' '
-+  endif
-+
-+  if($COMM == armci) then
-+     set DDI_COMM = "-DDDI_MPI -DDDI_ARMCI"
-+     set DDI_COMM = "$DDI_COMM -DDDI_ARMCI_IMPLICIT_NBPUT"
-+     set DDI_COMM = "$DDI_COMM -DDDI_ARMCI_IMPLICIT_NBGET"
-+     set DDI_COMM = "$DDI_COMM -DDDI_ARMCI_IMPLICIT_NBACC"
-+     set DDI_COMM = "$DDI_COMM -DDDI_ARMCI_IMPLICIT_WAIT"
-+  endif
-+
-+#        remember, the L is using ARMCI, with all the flags just above
-+  if ($TARGET == ibm-bg) then
-+     if ($GMS_BG_MODEL == L) set DDI_COMM = "-DDDI_BGL $DDI_COMM"
-+     if ($GMS_BG_MODEL == P) set DDI_COMM = "-DDDI_BGP $DDI_COMM"
-+  endif
-+
-+
-+# ---------------------- #
-+# System V Shared-Memory #
-+# ---------------------- #
-+  if($SYSV == true) set DDI_COMM = "$DDI_COMM -DUSE_SYSV"
-+
-+
-+# --------------------- #
-+# Troubleshooting Flags #
-+# --------------------- #
-+  set DDI_OPTS = "$DDI_COMM"
-+  set DDI_OPTS = "$DDI_OPTS -DMAX_SMP_PROCS=$MAXCPUS -DMAX_NODES=$MAXNODES"
-+
-+# 1) socklen_t
-+  if($?SOCKLEN_T == 0) set SOCKLEN_T = " "
-+  set DDI_OPTS = "$DDI_OPTS $SOCKLEN_T"
-+
-+# 2) debugging options
-+  if($?DEBUG_LEVEL == 0) then
-+     set DEBUG_LEVEL = ""
-+  else
-+     set DEBUG_LEVEL = "-DDDI_DEBUG=$DEBUG_LEVEL"
-+  endif
-+  set DDI_OPTS = "$DDI_OPTS $DEBUG_LEVEL"
-+
-+# 3) debugging a particular cpu
-+  if($?DEBUG_CPU == 0) then
-+     set DEBUG_CPU = ""
-+  else
-+     set DEBUG_CPU = "-DDDI_DEBUG_CPU=$DEBUG_CPU"
-+  endif
-+  set DDI_OPTS = "$DDI_OPTS $DEBUG_CPU"
-+
-+
-+# ------------- start of machine specific option selection -------------- #
-+
-+  unset CFLAGS
-+
-+# ------------ #
-+# Compaq Tru64 #
-+# ------------ #
-+#    Notes:
-+#    AXP systems may be labeled Digital, Compaq, or HP depending on age.
-+#    Similarly the O/S has various names, including OSF/1, Digital Unix.
-+#    This target is used for all such systems, and works for Linux too.
-+#
-+#    Old C compilers ("cc -V | more -5") such as 5.6 require that you 
-+#    add -Dsocklen_t=int to CFLAGS below, while newer versions such
-+#    as 5.9, 6.1, ... have the new data type socklen_t present.
-+#
-+  if($TARGET == axp64) then
-+
-+     set UNAME = `uname`
-+                         set CC = 'cc'
-+     if($UNAME == Linux) set CC = 'ccc'
-+                         set NumUS=1
-+     if($UNAME == Linux) set NumUS=2
-+ 
-+     set CFLAGS = "-DCOMPAQ -O4 -ansi_alias -std -I./"
-+     set CLIBS  = "-lpthread"
-+     set F77_OPTS = "-DINT_SIZE=long -D_UNDERSCORES=$NumUS"
-+     set AR_FLAGS     = 'cr'
-+     set RANLIB_FLAGS = ' '
-+
-+     set FORTRAN    = 'f77'
-+     if($UNAME == Linux) set FORTRAN = 'fort'
-+     set FORT_FLAGS = '-i8 -v '
-+     set FORT_LIBS  = ''
-+
-+  endif
-+
-+
-+# ------- #
-+# Cray X1 #
-+# ------- #
-+#     this machine based on an antiquated SHMEM interface,
-+#     creating serious doubt that this is a working machine.
-+  if($TARGET == cray-x1) then
-+     set RANLIB_FLAGS = ' '
-+     echo "Compiling: ddit3e.o for use on the Cray X1"
-+     set echo
-+     #---ftn -O2 -Ossp,aggress -xomp -dp -sdefault64 -c -V shmem/ddit3e.f
-+     ../comp ddit3e
-+     unset echo
-+
-+     if(-e ddit3e.o) then
-+        ar cr libddi.a ddit3e.o
-+        rm -f ddit3e.o
-+        echo "Finished compiling: ddit3e.o"
-+        goto finishOK
-+     else
-+        echo "Error compiling: ddit3e.o"
-+        exit 4
-+     endif
-+
-+     set FORTRAN    = 'ftn'
-+     set FORT_FLAGS = '-O2 -V -xomp -dp -sdefault64 -Ossp'
-+     set FORT_LIBS  = ''
-+  endif
-+
-+
-+# ------- #
-+# Cray XT #
-+# ------- #
-+if ($TARGET == cray-xt) then
-+   echo "---------------"
-+   echo "Loaded modules:"
-+   echo "---------------"
-+   module list
-+
-+#         two choices not included in the configuration step
-+#         These must match 'comp' and 'lked', and loaded software modules.
-+#         valid choices: gnu (Ran's choice), pathscale, intel, cray, pgi
-+   set GMS_XT_COMP = 'pgi'
-+#            valid choices: i7, barcelona, shanghai, or blank
-+   set GMS_XT_ARCH = ' '
-+
-+   set CC='cc'
-+   set CFLAGS='-DLINUX64 -DCRAY_MPI -DUSE_MPI_BARRIER -I./'
-+
-+   switch ($GMS_XT_COMP)
-+      case pgi:
-+         set CFLAGS="$CFLAGS -O3 -mcmodel=medium -fastsse -Mfpmisalign"
-+         breaksw
-+      case pathscale:
-+         set CFLAGS="$CFLAGS -O3 -m64 -fstrict-aliasing"
-+         breaksw
-+      case gnu:
-+         set CFLAGS="$CFLAGS -O3 -m64 -fstrict-aliasing"
-+         breaksw
-+      case intel:
-+      case cray:
-+      default:
-+         set CFLAGS="$CFLAGS -O3"
-+         breaksw
-+   endsw
-+
-+   switch ($GMS_XT_ARCH)
-+      case barcelona:
-+         set CFLAGS = "$CFLAGS -tp barcelona-64 -Mfpmisalign"
-+         breaksw
-+      case shanghai:
-+         set CFLAGS = "$CFLAGS -tp shanghai-64 -Mfpmisalign"
-+         breaksw
-+      case i7:
-+         set CFLAGS = "$CFLAGS -tp x64"
-+         breaksw
-+      default:
-+         breaksw
-+   endsw
-+
-+   set AR_FLAGS     = 'cr'
-+   set RANLIB_FLAGS = ' '
-+   set F77_OPTS = "-DINT_SIZE=long -D_UNDERSCORES=1"
-+endif
-+
-+# ------------------- #
-+# Fujitsu Prime Power #
-+# ------------------- #
-+  if($TARGET == fuji-pp32) then
-+     set CC = 'fcc'
-+     set CFLAGS='-DSUN32 -O -I./'
-+     set CLIBS='-lpthread -lsocket -lnsl'
-+     set F77_OPTS='-DINT_SIZE=int -D_UNDERSCORES=1'
-+     set AR_FLAGS     = '-cr'
-+     set RANLIB_FLAGS = '-c'
-+
-+     set FORTRAN    = 'f90'
-+     set FORT_FLAGS = '-KV8PLUS -fs'
-+     set FORT_LIBS  = '-SSL2'
-+  endif
-+
-+  if($TARGET == fuji-pp64) then
-+     set CC = 'fcc'
-+     set CFLAGS='-KV9 -DSUN64 -O -I./'
-+     set CLIBS='-KV9 -lsocket -lnsl -lpthread'
-+     set F77_OPTS='-DINT_SIZE=long -D_UNDERSCORES=1'
-+     set AR_FLAGS     = '-cr'
-+     set RANLIB_FLAGS = '-c'
-+
-+     set FORTRAN    = 'f90'
-+     set FORT_FLAGS = '-KV9 -fs -CcdII8'
-+     set FORT_LIBS  = '-SSL2'
-+  endif
-+
-+
-+# ----- #
-+# HP-UX #
-+# ----- #
-+  if($TARGET == hpux32) then
-+     set CC       = 'cc'
-+     set CFLAGS   = '-DHPUX32 +O3 +DD32 -D_32_BIT +O3 -I./'
-+     set CLIBS    = '-lpthread'
-+
-+     set F77_OPTS = '-DINT_SIZE=int -D_UNDERSCORES=0'
-+
-+     set AR_FLAGS     = 'cr'
-+     set RANLIB_FLAGS = '-c'
-+
-+     set FORTRAN    = 'f90'
-+     set FORT_FLAGS = '+O2 +Ofastaccess +noppu'
-+     set FORT_LIBS  = '-ldld +U77'
-+  endif
-+
-+#    see the note in readme.ddi if you have trouble compiling with
-+#    the socklen_t redefinition (this may occur on PA-RISC systems).
-+  if($TARGET == hpux64) then
-+     set CC     = 'cc'
-+     set CFLAGS = '-DHPUX64 +O3 +DD64 -D_REENTRANT -Dsocklen_t=int -I./'
-+     set CLIBS  = '-lpthread'
-+
-+     set F77_OPTS = '-DINT_SIZE=long -D_UNDERSCORES=0'
-+
-+     set AR_FLAGS     = 'cr'
-+     set RANLIB_FLAGS = ' '
-+
-+     set FORTRAN    = 'f90'
-+     set FORT_FLAGS = '+DD64 +O2 +i8 +noppu'
-+     set FORT_LIBS  = '-ldld +U77'
-+  endif
-+
-+
-+# ---------- #
-+# IBM 32-bit #
-+# ---------- #
-+  if($TARGET == ibm32) then
-+     set CC = 'xlc_r'
-+     set CFLAGS = "-DIBM32 -D_32_BIT -O3"
-+     set CFLAGS = "$CFLAGS -qalias=ansi -qthreaded -qarch=auto"
-+     set CFLAGS = "$CFLAGS -qtune=auto  -qstrict -I./"
-+     set CLIBS  = "-lpthread"
-+
-+     set F77_OPTS = "-DINT_SIZE=int -D_UNDERSCORES=0"
-+
-+     set AR_FLAGS     = '-r -s -X 32'
-+     set RANLIB_FLAGS = ' '
-+
-+     set FORTRAN    = 'xlf'
-+     set FORT_FLAGS = '-O2 -qarch=com -qflag=W:W -qhalt=W -qnosave'
-+     set FORT_LIBS  = ''
-+  endif
-+
-+
-+# ---------- #
-+# IBM 64-bit #
-+# ---------- #
-+  if($TARGET == ibm64 || $TARGET == ibm64-sp) then
-+     if (`uname` == AIX) then
-+                                  set CC = 'xlc_r'
-+        if($TARGET   == ibm64-sp) set CC = 'mpcc_r'
-+        set CFLAGS   = "-O3 -q64 -DIBM64"
-+        set CFLAGS   = "$CFLAGS -qalias=ansi -qthreaded -qarch=auto"
-+        set CFLAGS   = "$CFLAGS -qtune=auto  -qstrict -I./"
-+        set AR_FLAGS = '-r -s -X 64'
-+     else
-+        set CC       = 'gcc'
-+        set CFLAGS   = '-O2 -m64 -DIBM64 -I./'
-+        set AR_FLAGS = 'cr'
-+     endif
-+
-+     set CLIBS    = "-lpthread"
-+     set F77_OPTS = "-DINT_SIZE=long -D_UNDERSCORES=0"
-+     set RANLIB_FLAGS = ' '
-+
-+     set FORTRAN    = 'xlf'
-+     if(`uname` == AIX) then
-+       set FORT_FLAGS = '-q64 -qintsize=8'
-+       set FORT_LIBS  = ' '
-+     else
-+       set FORT_FLAGS = '-q64 -qintsize=8'
-+       set FORT_LIBS  = '-lxlf90_r'
-+     endif
-+     if($TARGET == ibm64-sp) then
-+       set FORTRAN    = 'mpxlf_r'
-+       set FORT_FLAGS = '-O2 -q64 -qintsize=8 -qarch=pwr3 -qtune=pwr3 -qspillsize=1500 -qflag=W:W -qhalt=W -qnosave'
-+       set FORT_LIBS  = '-llapi_r'
-+     endif
-+  endif
-+
-+
-+# ------------- #
-+# IBM Blue Gene #
-+# ------------- #
-+#  IBM seems to put the compilers on the path, but not ar,
-+#  so the full path to that is given to it.
-+#
-+#  Note: if ARMCI is installed, DDI can be run using ARMCI as a
-+#  one-sided library, without data servers.  Installation of
-+#  ARMCI must have been performed already, you may need to check
-+#  the path name below for its include files.
-+#
-+#  This machine can run over MPI-1 with data servers (COMM=mpi),
-+#  if your Blue Gene does not have AMRCI installed.
-+#
-+#  This is a limited memory machine, so request a smaller buffer
-+#  for global sum than the default.
-+#
-+  if ($TARGET == ibm-bg) then
-+     set CFLAGS = "-O3 -DIBMBG -D_32_BIT -DDDI_BUFFER_SIZE=1048576"
-+     set CFLAGS = "$CFLAGS -qalias=ansi -qthreaded -qarch=auto"
-+     set CFLAGS = "$CFLAGS -qstrict -I./"
-+
-+#            the old model uses ARMCI and the system's MPI
-+     if ($GMS_BG_MODEL == L) then
-+        set CC = 'blrts_xlc'
-+        set CFLAGS = "$CFLAGS -I/bgl/BlueLight/ppcfloor/bglsys/include"
-+        set CFLAGS = "$CFLAGS -I$GMS_ARMCI_PATH/src"
-+        set AR="/bgl/BlueLight/ppcfloor/blrts-gnu/bin/powerpc-bgl-blrts-gnu-ar"
-+     endif
-+#            The new model uses MPI only
-+     if ($GMS_BG_MODEL == P) then
-+        set CC = 'bgxlc_r'
-+        set CFLAGS = "$CFLAGS -I/bgsys/drivers/ppcfloor/comm/include"
-+        set CFLAGS = "$CFLAGS -I/bgsys/drivers/ppcfloor/arch/include"
-+        set AR="ar"
-+     endif
-+
-+     set CLIBS  = ""
-+
-+     set F77_OPTS = "-DINT_SIZE=int -D_UNDERSCORES=0"
-+
-+     set AR_FLAGS     = '-cr'
-+     set RANLIB_FLAGS = ' '
-+
-+     set FORTRAN    = 'mpixlf_r'   #?
-+     set FORT_FLAGS = '-O2 -qarch=440  -qflag=W:W -qhalt=W -qnosave '
-+     set FORT_LIBS  = ''
-+  endif
-+
-+
-+# ---------------------------------------- #
-+# Linux for 32 bit systems (Red Hat, etc.) #
-+# ---------------------------------------- #
-+#     see comments just above the Linux 64 bit clause just below.
-+#
-+  if($TARGET == linux32) then
-+
-+     set FORTRAN=$GMS_FORTRAN   # might be g77, gfortran, ifort, pgf77, f2c
-+
-+     set CC = 'gcc'
-+     set CFLAGS = "-DLINUX -O3 -fstrict-aliasing -I./"
-+     set CLIBS  = "-lpthread"
-+
-+     switch ($FORTRAN)
-+        case g77:
-+        case pgf77:
-+        case f2c:
-+           set NumUS=2
-+           breaksw
-+        case gfortran:
-+           set CFLAGS = "$CFLAGS -Dgetarg_=_gfortran_getarg_i4"
-+           set CFLAGS = "$CFLAGS -Diargc_=_gfortran_iargc"
-+           set NumUS=1
-+           breaksw
-+        case ifort:
-+           set NumUS=1
-+           breaksw
-+        default:
-+           echo "Please spell your linux32 FORTRAN compiler correctly."
-+           exit 4
-+     endsw
-+
-+     set F77_OPTS = "-DINT_SIZE=int -D_UNDERSCORES=$NumUS"
-+
-+     set AR_FLAGS     = 'cr'
-+     set RANLIB_FLAGS = ' '
-+
-+     set FORT_FLAGS = '-O2'
-+     set FORT_LIBS = ' '
-+  endif
-+
-+# ---------------------------------------------- #
-+# Linux for 64 bit PCs (both AMD and Intel chips #
-+# ---------------------------------------------- #
-+#       note that DDI is in C, so FORTRAN below is not used except for a
-+#       test program.  The compiler name also lets this script choose the
-+#       the number of trailing underscores needed, but more importantly,
-+#       deals with gfortran's use of names prefixed by _gfortran_ in its
-+#       library of FORTRAN callable routines.
-+#
-+#       Note that in all cases, we use the gcc compiler from GNU for
-+#       the compilation of DDI, even if a non-GNU FORTRAN is used.
-+#
-+  if($TARGET == linux64) then
-+
-+     set FORTRAN=$GMS_FORTRAN   # might be gfortran, ifort, pgf77, pathf90
-+#
-+#        Itan2 does not allow -m32/-m64 flags, it's all 64 bit pointers.
-+#
-+                             set ARCH='-m64'
-+     if (`uname -p` == ia64) set ARCH=''
-+
-+     set CC = 'gcc'
-+     set CFLAGS = "-DLINUX $ARCH -O3 -fstrict-aliasing -I./"
-+     set CLIBS  = "-lpthread"
-+
-+     switch ($FORTRAN)
-+        case gfortran:
-+           set CFLAGS = "$CFLAGS -Dgetarg_=_gfortran_getarg_i4"
-+           set CFLAGS = "$CFLAGS -Diargc_=_gfortran_iargc"
-+           set NumUS=1
-+           set FORT_FLAGS = "-O2 $ARCH -fdefault-integer-8 -std=legacy"
-+           breaksw
-+        case pgf77:
-+           set NumUS=1
-+           set CFLAGS = "$CFLAGS -mcmodel=medium"
-+           set FORT_FLAGS = "-O2 $ARCH -i8 -i8storage -mcmodel=medium"
-+           breaksw
-+        case ifort:
-+           set NumUS=1
-+           set FORT_FLAGS = "-O2 -i8"
-+           breaksw
-+        case pathf90:
-+           set NumUS=2
-+           set FORT_FLAGS = "-O2 $ARCH -i8"
-+           breaksw
-+        default:
-+           echo "Please spell your linux64 FORTRAN compiler correctly."
-+           exit 4
-+     endsw
-+
-+     set F77_OPTS = "-DINT_SIZE=long -D_UNDERSCORES=$NumUS"
-+
-+     set AR_FLAGS     = 'cr'
-+     set RANLIB_FLAGS = ' '
-+
-+     set FORT_LIBS = ' '
-+  endif
-+
-+
-+# ----------------------- #
-+# NEC SX vector processor #
-+# ----------------------- #
-+#    Caution!  This has not been tested, but rather it is an educated guess.
-+  if($TARGET == necsx) then
-+     set CC = 'c++'
-+     set CFLAGS = "-DNECSX -O -I./ -size_t64"
-+     set CLIBS  = "-lpthread"
-+     
-+     set F77_OPTS = '-DINT_SIZE=long -D_UNDERSCORES=1'
-+
-+     set AR_FLAGS     = 'cr'
-+     set RANLIB_FLAGS = ' '
-+
-+     set FORTRAN    = 'f90'
-+     set FORT_FLAGS = '-ebw -size_t64 -Wf"-Nv"'
-+     set FORT_LIBS  = ''
-+  endif
-+
-+
-+# -------- #
-+# Mac OS X #
-+# -------- #
-+# OS X 10.1 will not work at all, 10.2 is primitive, 10.3 needs an edit below.
-+# for 64 bit mode, we need at least OS X 10.4, but >= 10.5 is more better.
-+#
-+  if (($TARGET == mac32) || ($TARGET == mac64)) then
-+
-+     set FORTRAN=$GMS_FORTRAN       # will be g77 or gfortran
-+
-+     set CC = 'gcc'
-+                           set CFLAGS = "-DMACOSX"
-+     if ($TARGET == mac64) set CFLAGS = "-DLINUX -m64"
-+     set CFLAGS = "$CFLAGS -O3 -fstrict-aliasing -I./"
-+     set CLIBS  = "-lpthread"
-+
-+     #       uncomment next line for OS X 10.3
-+     #---set CFLAGS = "$CFLAGS -Dsocklen_t=int"
-+
-+     switch ($FORTRAN)
-+        case g77:
-+           set NumUS=2
-+           set FORT_FLAGS = '-O2'
-+           set FORT_LIBS  = ''
-+           breaksw
-+        case gfortran:
-+           set CFLAGS = "$CFLAGS -Dgetarg_=_gfortran_getarg_i4"
-+           set CFLAGS = "$CFLAGS -Diargc_=_gfortran_iargc"
-+           set NumUS=1
-+           set FORT_FLAGS = '-O2 -m64 -fdefault-integer-8 -std=legacy'
-+           if ($TARGET == mac32) set FORT_FLAGS = '-O2 -std=legacy'
-+           set FORT_LIBS  = ''
-+           breaksw
-+        default:
-+           echo Your OS X FORTRAN compiler was not correctly specified.
-+           exit
-+           breaksw
-+     endsw
-+
-+                          set F77_OPTS = "-DINT_SIZE=int"
-+     if($TARGET == mac64) set F77_OPTS = "-DINT_SIZE=long"
-+     set F77_OPTS = "$F77_OPTS -D_UNDERSCORES=$NumUS"
-+
-+     set AR_FLAGS     = 'cr'
-+     set RANLIB_FLAGS = '-c'
-+
-+  endif
-+
-+
-+# ---------- #
-+# SGI 32-bit #
-+# ---------- #
-+  if($TARGET == sgi32) then
-+     set CC='cc'
-+     set CFLAGS='-DSGI32 -n32 -i4 -O -I./'
-+     set CLIBS='-lpthread'
-+
-+     set F77_OPTS='-DINT_SIZE=int -D_UNDERSCORES=1'
-+     set AR_FLAGS='-cr'
-+     set RANLIB_FLAGS=' '
-+
-+     set FORTRAN    = 'f77'
-+     set FORT_FLAGS = '-O2 -automatic -G0 -n32 -i4 -woff 136,2290' #?
-+     set FORT_LIBS  = ''
-+
-+  endif
-+
-+
-+# ---------- #
-+# SGI 64-bit #
-+# ---------- #
-+#    There is a bit of trouble with the Origin:
-+#    The SHMEM option dies upon touching AO integral files
-+#    The Sockets option usually can't start 16 or more processes
-+#    The old version has to start data servers which are awkward on Origin
-+  if($TARGET == sgi64) then
-+     switch ($COMM)
-+        case shmem:
-+           echo "Compiling: ddio3k.o"
-+           #---set echo
-+           #---f77 -O2 -automatic -G0 -64 -i8 -woff 2290 -c shmem/ddio3k.f
-+           #---unset echo
-+           ../comp ddio3k
-+
-+           if(-e ddio3k.o) then
-+              ar -cr libddi.a ddio3k.o
-+              rm -f ddio3k.o
-+              echo "Finished compiling: ddio3k.o"
-+              goto finishOK
-+           else
-+              echo "Error compiling: ddio3k.o"
-+              exit 4
-+           endif
-+           breaksw
-+        case sockets:
-+           set CC = 'cc -64 -mips4'
-+           set CFLAGS = '-DSGI64 -O -I./'
-+           set CLIBS='-lpthread'
-+           set F77_OPTS='-DINT_SIZE=long -D_UNDERSCORES=1'
-+           set AR_FLAGS     = '-cr'
-+           set RANLIB_FLAGS = '-c'
-+           breaksw
-+        default:
-+           echo SGI 64 bits requires COMM of sockets or shmem.
-+           exit 3
-+           breaksw
-+     endsw
-+
-+     set FORTRAN    = 'f77'
-+     set FORT_FLAGS = '-O2 -automatic -G0 -64 -i8 -woff 136,2290' #?
-+     set FORT_LIBS  = ''
-+
-+  endif
-+
-+
-+# ---------- #
-+# Sun 32-bit #
-+# ---------- #
-+  if($TARGET == sun32) then
-+
-+     if(`uname -p` == sparc) set ARCH='-xarch=v8plus'
-+     if(`uname -p` == i386)  set ARCH='-xarch=pentium_pro'
-+
-+     set CC = 'cc'
-+     set CFLAGS = "$ARCH -DSUN32 -O -Dsocklen_t=int -D_32_BIT -I./"
-+     set CLIBS  = "-lsocket -lnsl -lpthread"
-+
-+     set F77_OPTS = "-DINT_SIZE=int -D_UNDERSCORES=1"
-+
-+     set AR_FLAGS     = '-cr'
-+     set RANLIB_FLAGS = '-c'
-+
-+     set FORTRAN    = $GMS_FORTRAN
-+     if ($FORTRAN == f77) set FORT_FLAGS = "$ARCH -O2"
-+     if ($FORTRAN == f90) set FORT_FLAGS = "$ARCH -O2 -xtypemap=integer:32"
-+     set FORT_LIBS="-lsocket -lnsl -lpthread"
-+
-+  endif
-+
-+
-+# ---------- #
-+# Sun 64-bit #
-+# ---------- #
-+  if($TARGET == sun64) then
-+#         define ARCH, compilers after v 8.3 should say the simple -m64
-+     set xxx=$GMS_SUN_FORT_VERNO
-+     set f90_major=$xxx:r
-+     set f90_minor=$xxx:e
-+                                                 set newf90=false
-+     if (($f90_major == 8) && ($f90_minor >= 3)) set newf90=true
-+     if  ($f90_major >= 9)                       set newf90=true
-+
-+     if ($newf90 == true) then
-+        set ARCH=-m64
-+     else
-+        if (`uname -p` == sparc) set ARCH='-xarch=v9'
-+        if (`uname -p` == i386)  set ARCH='-xarch=amd64'
-+     endif
-+#         so now ARCH is finally defined (used by both C and FORTRAN)
-+
-+     set CC = 'cc'
-+     set CFLAGS = "$ARCH -DSUN64 -O -I./"
-+     set CLIBS  = '-lsocket -lnsl -lpthread'
-+
-+     set F77_OPTS = "-DINT_SIZE=long -D_UNDERSCORES=1"
-+
-+     set AR_FLAGS     = '-cr'
-+     set RANLIB_FLAGS = '-c'
-+
-+     set FORTRAN = 'f90'
-+     set FORT_FLAGS="$ARCH -O2 -xtypemap=integer:64"
-+     set FORT_LIBS="-lsocket -lnsl -lpthread"
-+  endif
-+
-+# ----------------- #
-+# Microsoft Windows #
-+# ----------------- #
-+# Currently with only PGI compiler support.
-+
-+  if($TARGET == win32) then
-+
-+     set FORTRAN=pgf77     # choose from pgf77
-+
-+     switch ($FORTRAN)
-+        case pgf77:
-+           set CC = 'pgcc'
-+#
-+#          For more detailed information as to which flags are being used
-+#          by the compiler during the build - uncomment the line below.
-+#
-+           set CC = "$CC -v"
-+#
-+           set CFLAGS = '-DLINUX -DWINDOWS -DUSE_DDI_COLLECTIVE_ROUTINES -DOLDDDITIMER'
-+           if ($GMS_WIN_OPT == baseline)    set CFLAGS = "$CFLAGS -Bstatic -Minform=severe -O0"
-+           if ($GMS_WIN_OPT == linux)       set CFLAGS = "$CFLAGS -Bstatic -Minform=severe -O3"
-+           if ($GMS_WIN_OPT == fast)        set CFLAGS = "$CFLAGS -Bstatic -Minform=severe -fast"
-+           if ($GMS_WIN_OPT == testing)     set CFLAGS = "$CFLAGS -Bstatic -Minform=severe -fast $GMS_WIN_FLAGS"
-+           set CFLAGS = "$CFLAGS $GMS_WIN_TP -I./include"
-+           set NumUS=2
-+           if ($COMM == mpi) then
-+             echo "----------------------------------------------   ATTENTION   ----------------------------------------------"
-+             echo "- We are using MPI and not TCP/IP sockets so please ignore the following compiler warning message:        -"
-+             echo "- libddi.a(tcp_sockets.o) : warning LNK####: no public symbols found; archive member will be inaccessible -"
-+             echo "-----------------------------------------------------------------------------------------------------------"
-+           endif
-+           breaksw
-+        default:
-+           echo "Please spell your win32 bit FORTRAN compiler name correctly."
-+           exit 4
-+     endsw
-+     set CLIBS  = ' '
-+     set F77_OPTS = "-DINT_SIZE=int -D_UNDERSCORES=$NumUS"
-+     set AR_FLAGS     = 'cr'
-+     set RANLIB_FLAGS = ' '
-+  endif
-+
-+  if($TARGET == win64) then
-+
-+     set FORTRAN=pgf77     # choose from pgf77
-+
-+     switch ($FORTRAN)
-+        case pgf77:
-+           set CC = 'pgcc'
-+#
-+#          For more detailed information as to which flags are being used
-+#          by the compiler during the build - uncomment the line below.
-+#
-+           set CC = "$CC -v"
-+#
-+           set CFLAGS = '-DLINUX -DWINDOWS -DWINDOWS64 -DUSE_DDI_COLLECTIVE_ROUTINES -DOLDDDITIMER'
-+#          set CFLAGS = '-DLINUX -DWINDOWS -DWINDOWS64 -DOLDDDITIMER'
-+           if ($GMS_WIN_OPT == baseline)    set CFLAGS = "$CFLAGS -Bstatic -Minform=severe -O0"
-+           if ($GMS_WIN_OPT == linux)       set CFLAGS = "$CFLAGS -Bstatic -Minform=severe -O2"
-+           if ($GMS_WIN_OPT == fast)        set CFLAGS = "$CFLAGS -Bstatic -Minform=severe -fast"
-+           if ($GMS_WIN_OPT == testing)     set CFLAGS = "$CFLAGS -Bstatic -Minform=severe -fast $GMS_WIN_FLAGS"
-+           set CFLAGS = "$CFLAGS $GMS_WIN_TP -I./include"
-+           set NumUS=1
-+           if ($COMM == mpi) then
-+             echo "----------------------------------------------   ATTENTION   ----------------------------------------------"
-+             echo "- We are using MPI and not TCP/IP sockets so please ignore the following compiler warning message:        -"
-+             echo "- libddi.a(tcp_sockets.o) : warning LNK####: no public symbols found; archive member will be inaccessible -"
-+             echo "-----------------------------------------------------------------------------------------------------------"
-+           endif
-+           breaksw
-+        default:
-+           echo "Please spell your win64 bit FORTRAN compiler name correctly."
-+           exit 4
-+     endsw
-+     set CLIBS  = ' '
-+     set F77_OPTS = "-DINT_SIZE=__int64 -D_UNDERSCORES=$NumUS $GMS_WIN_FLAGS"
-+     set AR_FLAGS     = 'cr'
-+     set RANLIB_FLAGS = ' '
-+  endif
-+
-+#            this is how we trap for an unsupported machine.
-+  if ($?CFLAGS) then
-+  else
-+    echo The compddi script does not select a correct TARGET machine type.
-+    echo What you typed when editing this script was $TARGET
-+    exit 4
-+  endif
-+
-+# ------------- end of machine specific option selection -------------- #
-+
-+
-+  echo Attempting to remove binary files from previous DDI build...
-+                               rm -f src/*.o 
-+  if (-e libddi.a)             rm -f libddi.a
-+  if (-e kickoff/libddikick.a) rm -f kickoff/libddikick.a
-+  if (-e ddikick.x)            rm -f ddikick.x 
-+  if (-e ddi_test.x)           rm -f ddi_test.x
-+  if (-e ddi_server.x)         rm -f ddi_server.x
-+  echo " "
-+  echo Beginning the DDI compilation at `date`
-+  echo " "
-+
-+# --------------------------------------------------- #
-+# append the MPI include path to the C compiler flags
-+# --------------------------------------------------- #
-+  if($COMM == mixed) set CFLAGS = "$CFLAGS -I$MPI_INCLUDE_PATH"
-+  if($COMM == mpi)   then
-+     switch ($GMS_MPI_LIB)
-+        case msmpi:
-+           set CFLAGS = "$CFLAGS -Mmpi=msmpi"
-+           breaksw
-+        case CrayXT:
-+           breaksw
-+        default:
-+           set CFLAGS = "$CFLAGS -I$MPI_INCLUDE_PATH"
-+           breaksw
-+     endsw
-+  endif
-+
-+
-+  if($DDI_SOURCE == old) goto old
-+
-+
-+# ---------------------- #
-+# Compile common objects #
-+# ---------------------- #
-+#   In this context, common means the TCP/IP kickoff program
-+#   will also be using this code, so save into its library too.
-+#
-+#   Here and elsewhere, Microsoft Windows requires -o to name object files
-+#
-+  chdir src
-+  foreach OBJ ( soc_create      std_system     tcp_sockets   \
-+                debug           parse_node_args              \
-+              )
-+    echo "Compiling common object: $OBJ.o"
-+    set echo
-+    $CC $CFLAGS $DDI_OPTS -o $OBJ.o -c $OBJ.c
-+    unset echo
-+    if(-e $OBJ.o) then
-+       echo "Finished compiling: $OBJ.o"
-+    else
-+       echo "Error compiling: $OBJ.o"
-+       goto bombout
-+    endif
-+    ar $AR_FLAGS ../libddi.a   $OBJ.o
-+    if($COMM == sockets) ar $AR_FLAGS ../kickoff/libddikick.a  $OBJ.o
-+    echo " "
-+  end
-+  chdir ..
-+
-+# ------------------- #
-+# Compile DDI objects #
-+# ------------------- #
-+#   The bulk of the DDI library:
-+  chdir src
-+  set OBJ_LIST=(ddi            ddi_send        ddi_recv        \
-+                ddi_get        ddi_put         ddi_acc         \
-+                ddi_getacc     ddi_distrib     \
-+                ddi_subpatch   ddi_index       ddi_recvany     \
-+                ddi_create     ddi_destroy     ddi_server      \
-+                ddi_finalize   ddi_memory      ddi_lapi        \
-+                ddi_isend      ddi_irecv       ddi_wait        \
-+                ddi_signals    ddi_id          ddi_timer       \
-+                ddi_gdlb       ddi_dlb         ddi_dlb_proc    \
-+                ddi_init       sysv_ipc       \
-+                ddi_comm       ddi_comm_group  ddi_comm_send   \
-+                ddi_comm_recv  ddi_comm_sync   ddi_comm_gsum   \
-+                ddi_comm_bcast ddi_smp         ddi_comm_create \
-+                ddi_comm_nproc ddi_comm_nnode \
-+                ddi_runtime     \
-+                ddi_util       mmath          \
-+                ddi_arr        ddi_arr_acc     ddi_arr_add     \
-+                ddi_arr_dot    ddi_arr_scalar  ddi_arr_select  )
-+
-+  # ARMCI objects
-+  if ($COMM == armci) then
-+    set OBJ_LIST=($OBJ_LIST     \
-+                ddi_armci      ddi_armci_init  ddi_armci_acc  \
-+                ddi_armci_get  ddi_armci_put   ddi_armci_getacc)
-+  endif
-+
-+  # Blue Gene objects
-+  if ($TARGET == ibm-bg) then
-+    if ($GMS_BG_MODEL == L) set OBJ_LIST=($OBJ_LIST ddi_bgl)
-+    if ($GMS_BG_MODEL == P) set OBJ_LIST=($OBJ_LIST ddi_bgp)
-+  endif
-+
-+  # Microsoft Windows objects
-+  if (($TARGET == win32) || ($TARGET == win64)) then
-+    set OBJ_LIST=($OBJ_LIST windows)
-+  endif
-+
-+  foreach OBJ ($OBJ_LIST) 
-+    echo "Compiling DDI object: $OBJ.o"
-+    set echo
-+    $CC $CFLAGS $DDI_OPTS -o $OBJ.o -c $OBJ.c
-+    unset echo
-+    if(-e $OBJ.o) then
-+       echo "Finished compiling: $OBJ.o"
-+    else
-+       echo "Error compiling: $OBJ.o"
-+       goto bombout
-+    endif
-+    ar $AR_FLAGS ../libddi.a  $OBJ.o
-+    echo " "
-+  end 
-+  chdir ..
-+ 
-+
-+# ------------------------ #
-+# Compile FORTRAN Wrappers #
-+# ------------------------ #
-+  chdir src
-+  echo "Compiling FORTRAN wrappers for DDI"
-+  set echo
-+  $CC $CFLAGS $DDI_OPTS $F77_OPTS -o ddi_fortran.o -c ddi_fortran.c
-+  unset echo
-+  if(-e ddi_fortran.o) then
-+     echo "Finished compiling: ddi_fortran.o"
-+  else
-+     echo "Error compiling: ddi_fortran.o"
-+     goto bombout
-+  endif
-+  ar $AR_FLAGS ../libddi.a  ddi_fortran.o
-+  echo " "
-+  chdir ..
-+
-+
-+# ------------------------ #
-+# Compile DDI test program #
-+# ------------------------ #
-+#      the test program should work over other communication libraries,
-+#      such as MPI-1, but for now we create it only for the very easy
-+#      case of TCP/IP.
-+#      We would need to add MPI library lists (not just an MPI include path)
-+#      to this script, in order to correctly build the test program.
-+#      That is postponed to some other time!
-+  if($COMM == sockets) then
-+     chdir test
-+     echo "Creating DDI test program, ddi_test.x"
-+     set echo
-+     $FORTRAN $FORT_FLAGS -o ../ddi_test.x ddi_test.f \
-+                    ../libddi.a $FORT_LIBS $CLIBS
-+     unset echo
-+     if (-e ddi_test.o) rm -f ddi_test.o
-+     echo " "
-+     chdir ..
-+  endif
-+
-+
-+# --------------------------- #
-+# Compile data_server program #
-+# --------------------------- #
-+#    This program is not used by GAMESS, which acts as its own data server,
-+#    but might be useful if one wants a light-weight data server.
-+#    This program is in principle usable with MPI-1, but we have not yet
-+#    done the scripting to add all the MPI library possibilities here.
-+  if($COMM == sockets) then
-+     chdir server
-+     echo "Creating standalone DDI data server program, data_server.x"
-+     set echo
-+     $CC $CFLAGS $DDI_OPTS -I../src -o ../data_server.x data_server.c \
-+                    ../libddi.a $CLIBS
-+     unset echo
-+     rm -f data_server.o
-+     echo " "
-+     chdir ..
-+  endif
-+
-+
-+# ------------------------------------------------------ #
-+# Compile DDIKICK objects, and then link kickoff program #
-+# ------------------------------------------------------ #
-+#     The reason for not inserting a "mv ddikick.x .." command in
-+#     this script is for situations when rebuilding the library is
-+#     done later, when one might not want to erase the previous
-+#     ddikick.x (i.e. if GAMESS jobs are running at the moment).
-+#
-+#     note that some of the routines called by ddikick.x
-+#     have already been compiled above, and saved in
-+#     the kickoff program's library file.
-+  if($COMM == sockets) then
-+     chdir kickoff
-+     echo "TCP/IP communications uses a special kickoff program, ddikick.x"
-+     echo " "
-+     foreach OBJ ( ddikick        ddikick_error  accept_tasks   \
-+                   finalize_tasks kickoff_local  kickoff_remote \
-+                   kickoff_pbs \
-+                 )
-+       echo "Compiling ddikick object: $OBJ.o"
-+       set echo
-+       $CC $CFLAGS $DDI_OPTS -I../src -c $OBJ.c
-+       unset echo
-+       if(-e $OBJ.o) then
-+          echo "Finished compiling: $OBJ.o"
-+       else
-+          echo "Error compiling: $OBJ.o"
-+          goto bombout
-+       endif
-+       if ($OBJ != ddikick) ar $AR_FLAGS libddikick.a  $OBJ.o
-+       echo " "
-+     end
-+     #
-+     ranlib $RANLIB_FLAGS libddikick.a
-+     #
-+     echo "Linking DDI kickoff program, ddikick.x"
-+     set echo
-+     $CC $CFLAGS $DDI_OPTS -o ../ddikick.x ddikick.o libddikick.a $CLIBS
-+     unset echo
-+     echo " "
-+     echo "Don't forget to move ddikick.x up one directory level,"
-+     echo "by a   'mv ddikick.x ..'   command."
-+     echo " "
-+     rm -f *.o libddikick.a
-+     chdir ..
-+  endif
-+
-+
-+# --------------------------- #
-+# Compile OLD DDI source code #
-+# --------------------------- #
-+old:
-+  if($DDI_SOURCE == old) then
-+      chdir oldsrc
-+      # ddisoc.c
-+        echo "Compiling: ddisoc.o"
-+        set echo
-+        $CC $CFLAGS -c ddisoc.c
-+        unset echo
-+        if(-e ddisoc.o) then
-+           echo "Finished compiling: ddisoc.o"
-+        else
-+           echo "Error compiling: ddisoc.c"
-+           goto bombout
-+        endif
-+        ar $AR_FLAGS ../libddi.a  ddisoc.o
-+        echo ""
-+
-+      # ddi.src
-+        echo "Compiling: ddi.o"
-+        $FORTRAN $FORT_FLAGS -c ddi.f
-+        if(-e ddi.o) then
-+           echo "Finished compiling: ddi.o"
-+        else 
-+           echo "Error compiling: ddi.o"
-+           goto bombout
-+        endif
-+        ar $AR_FLAGS ../libddi.a ddi.o
-+        rm -f ddi.o
-+        echo ""
-+
-+      # ddikick.x
-+        if(-e ../ddikick.x) rm -f ../ddikick.x
-+        echo "Compiling: ddikick.x"
-+        set echo
-+        $CC $CFLAGS $DDI_OPTS -o ../ddikick.x ddikick.c $CLIBS
-+        unset echo
-+        echo ""
-+      chdir ..
-+  endif
-+ 
-+
-+# ------------------------------------------------------------ #
-+# End of compile script, run "ranlib" on the library and exit. #
-+# ------------------------------------------------------------ #
-+finishOK:
-+
-+#   SGI's IRIX has its ranlib built into its ar command (very rational)
-+  if (($TARGET != sgi64) && ($TARGET != sgi32)) then
-+     ranlib $RANLIB_FLAGS libddi.a
-+  endif
-+
-+  echo "DDI compilation ended successfully."
-+  rm -f src/*.o
-+  date
-+  time
-+  exit
-+
-+#    if something bad happens, remove all binary files,
-+#    to make sure the user realizes compddi crashed out.
-+bombout:
-+  echo " "
-+  echo "DDI compilation did not finish correctly, please fix, and try again"
-+  echo " "
-+  chdir ..
-+  if (-e libddi.a)             rm -f libddi.a
-+  if (-e kickoff/libddikick.a) rm -f kickoff/libddikick.a
-+  if (-e ddikick.x)            rm -f ddikick.x
-+  if (-e ddi_test.x)           rm -f ddi_test.x
-+  if (-e ddi_server.x)         rm -f ddi_server.x
-+  rm -f src/*.o
-+  rm -f kickoff/*.o
-+  rm -f test/*.o
-+  rm -f server/*.o
-+  date
-+  time
-+  exit 8
-diff -urN gamess.orig/ddi/kickoff/ddikick.c gamess/ddi/kickoff/ddikick.c
---- gamess.orig/ddi/kickoff/ddikick.c	2008-05-06 14:16:12.000000000 +0400
-+++ gamess/ddi/kickoff/ddikick.c	2010-12-07 20:21:55.000000000 +0300
-@@ -105,7 +105,7 @@
-           remoteshell = argv[++i];
-        } else {
-           if((remoteshell = getenv("DDI_RSH")) == NULL) {
--              remoteshell = (char *) strdup("rsh");
-+              remoteshell = (char *) strdup("ssh");
-           }
-        }
- 
-diff -urN gamess.orig/lked gamess/lked
---- gamess.orig/lked	2010-10-01 19:37:05.000000000 +0400
-+++ gamess/lked	2010-12-07 20:26:57.000000000 +0300
-@@ -53,7 +53,7 @@
- #
- #   3. optional Nuclear-Electronic Orbital method, using NEO code
- #
--set NEO=false
-+set NEO=true
- #
- #   4. optional Nvidia/CUDA code, for closed shell SCF Fock construction 
- #         see ~/gamess/libqc/aaa.readme.1st for more information
-@@ -356,17 +356,17 @@
-    switch ($GMS_FORTRAN)
-      case g77:
-         set LDR='g77'
--        set LDOPTS=' '  # add '-Wl,-M' to see load map
-+        set gentoo-LDOPTS=' '  # add '-Wl,-M' to see load map
-         set FORTLIBS=' '
-         breaksw
-      case gfortran:
-         set LDR='gfortran'
--        set LDOPTS=' '
-+        set gentoo-LDOPTS=' '
-         set FORTLIBS=' '
-         breaksw
-      case ifort:
-         set LDR='ifort'
--        set LDOPTS=' '  # add '-Wl,-M' to see load map
-+        set gentoo-LDOPTS=' '  # add '-Wl,-M' to see load map
-         set FORTLIBS='-Vaxlib'
-         breaksw
-      case pgf77:
-@@ -376,7 +376,7 @@
-         breaksw
-      case f2c:
-         set LDR='gcc'
--        set LDOPTS=' '
-+        set gentoo-LDOPTS=' '
-         set FORTLIBS='-lf2c -lm'
-         breaksw
-      default:
-@@ -427,12 +427,7 @@
-       #     Otherwise, attempt a link against shared object libs.
-       #     See the 64 bit Atlas below for a way to fix the linker's
-       #     not being able to locate -lf77blas, if that happens.
--      if (-e $GMS_MATHLIB_PATH/libf77blas.a) then
--         set MATHLIBS="$GMS_MATHLIB_PATH/libf77blas.a"
--         set MATHLIBS="$MATHLIBS $GMS_MATHLIB_PATH/libatlas.a"
--      else
--         set MATHLIBS="-L$GMS_MATHLIB_PATH -lf77blas -latlas"
--      endif
-+      set MATHLIBS=`pkg-config --libs blas`
-       set BLAS=' '
-       breaksw
- 
-@@ -466,12 +461,12 @@
-    switch ($GMS_FORTRAN)
-       case gfortran:
-          set LDR='gfortran'
--         set LDOPTS=' '
-+         set gentoo-LDOPTS=' '
-          set FORTLIBS=' '
-          breaksw
-       case ifort:
-          set LDR='ifort'
--         set LDOPTS='-i8'  # -Wl,-M generates a load map
-+         set gentoo-LDOPTS=' '  # -Wl,-M generates a load map
- #            this auxiliary library seems to have disappeared in ifort 10
-          set FORTLIBS=' '
-          if($GMS_IFORT_VERNO < 10) set FORTLIBS='-Vaxlib'
-@@ -549,12 +544,7 @@
-       #          ln -s liblapack_atlas.so.3.0 liblapack.so
-       #          ln -s liblapack.so.3.0       liblapack.so
-       #     It is strange the RPM's don't do these soft links for us.
--      if (-e $GMS_MATHLIB_PATH/libf77blas.a) then
--         set MATHLIBS="$GMS_MATHLIB_PATH/libf77blas.a"
--         set MATHLIBS="$MATHLIBS $GMS_MATHLIB_PATH/libatlas.a"
--      else
--         set MATHLIBS="-L$GMS_MATHLIB_PATH -lf77blas -latlas"
--      endif
-+      set MATHLIBS=`pkg-config --libs blas`
-       set BLAS=' '
-       breaksw
- 
-diff -urN gamess.orig/runall gamess/runall
---- gamess.orig/runall	2009-02-28 02:57:18.000000000 +0300
-+++ gamess/runall	2010-12-07 20:21:55.000000000 +0300
-@@ -10,7 +10,6 @@
- #
- #  Only the following two lines need to be customized:
- #
--chdir /u1/mike/gamess
- set VERNO=00
- #
- #  Loop over all Ntest jobs supplied with GAMESS
-@@ -27,7 +26,7 @@
-      gms -v $VERNO -q ti -l exam$NUM.log exam$NUM
-      sleep 5
-   else
--     ./rungms exam$NUM $VERNO 1  >&  exam$NUM.log
-+     rungms exam$NUM $VERNO 1  >&  exam$NUM.log
-   endif
-   @ i++
- end
-diff -urN gamess.orig/rungms gamess/rungms
---- gamess.orig/rungms	2010-08-17 17:46:59.000000000 +0400
-+++ gamess/rungms	2010-12-07 20:36:43.000000000 +0300
-@@ -55,7 +55,7 @@
- #       one for LoadLeveler "ll-gms" on the IBM SP line.
- #
- set TARGET=sockets
--set SCR=/scr/$USER
-+set SCR=`pwd`
- #
- set JOB=$1      # name of the input file xxx.inp, give only the xxx part
- set VERNO=$2    # revision number of the executable created by 'lked' step
-@@ -122,17 +122,17 @@
- #
- set echo
- #                        ASCII input files (see explanation above)
--setenv ERICFMT ~mike/gamess/ericfmt.dat
--setenv MCPPATH ~mike/gamess/mcpdata
-+setenv ERICFMT /usr/share/gamess/ericfmt/ericfmt.dat
-+setenv MCPPATH /usr/share/gamess/mcpdata
- setenv  EXTBAS /dev/null
- setenv  NUCBAS /dev/null
- #
--setenv  MAKEFP ~$USER/scr/$JOB.efp
--setenv   GAMMA ~$USER/scr/$JOB.gamma
--setenv TRAJECT ~$USER/scr/$JOB.trj
--setenv RESTART ~$USER/scr/$JOB.rst
-+setenv  MAKEFP $SCR/$JOB.efp
-+setenv   GAMMA $SCR/$JOB.gamma
-+setenv TRAJECT $SCR/$JOB.trj
-+setenv RESTART $SCR/$JOB.rst
- setenv   INPUT $SCR/$JOB.F05
--setenv   PUNCH ~$USER/scr/$JOB.dat
-+setenv   PUNCH $SCR/$JOB.dat
- setenv  AOINTS $SCR/$JOB.F08
- setenv  MOINTS $SCR/$JOB.F09
- setenv DICTNRY $SCR/$JOB.F10
-@@ -321,7 +321,7 @@
-     if (null$4 == null) set ELGNAME=ELGFILE
-     set echo
-     setenv AOINTS   $SCR/$ELGNAME.F08
--    setenv ELGDOS   ~$USER/scr/$JOB.ldos
-+    setenv ELGDOS   $SCR/$JOB.ldos
-     setenv ELGDAT   $SCR/$ELGNAME.F71
-     setenv ELGPAR   $SCR/$ELGNAME.F72
-     setenv ELGCUT   $SCR/$ELGNAME.F74
-@@ -474,7 +474,7 @@
-    if ($os == AIX)     set GMSPATH=/u1/mike/gamess
-    if ($os == Darwin)  set GMSPATH=/Users/mike/desktop/gamess
-    if ($os == HP-UX)   set GMSPATH=/zr/mike/gamess
--   if ($os == Linux)   set GMSPATH=/cu/mike/gamess
-+   if ($os == Linux)   set GMSPATH=/usr/bin
-    if ($os == OSF1)    set GMSPATH=/in/mike/gamess
-    if ($os == SunOS)   set GMSPATH=/hf/mike/gamess
- #       special compilation for Sun E450 uSPARC       (uname also= SunOS)
-@@ -521,80 +521,6 @@
-       set HOSTLIST=(`hostname`)
-    endif
- #
--#       2. This is an example of how to run on a 4-way SMP enclosure,
--#          where all CPUs (aka COREs) are inside a -single- NODE.
--#          The example is repeated for some nodes we use as 2-way's.
--#     At other locations, you may wish to consider some of the examples
--#     that follow below, after commenting out this ISU-specific part.
--   if ($NCPUS > 1) then
--      switch (`hostname`)
--         case ti.msg.chem.iastate.edu:
--         case cd.msg.chem.iastate.edu:
--         case zn.msg.chem.iastate.edu:
--         case ni.msg.chem.iastate.edu:
--         case co.msg.chem.iastate.edu:
--         case pb.msg.chem.iastate.edu:
--         case bi.msg.chem.iastate.edu:
--         case po.msg.chem.iastate.edu:
--         case at.msg.chem.iastate.edu:
--         case sc.msg.chem.iastate.edu:
--            if ($NCPUS > 4) set NCPUS=4
--            set NNODES=1
--            set HOSTLIST=(`hostname`:cpus=$NCPUS)
--            breaksw
--         case se.msg.chem.iastate.edu:
--         case sb.msg.chem.iastate.edu:
--         case br.msg.chem.iastate.edu:
--            if ($NCPUS > 2) set NCPUS=2
--            set NNODES=1
--            set HOSTLIST=(`hostname`:cpus=$NCPUS)
--            breaksw
--         default:
--            echo I do not know how to run this node in parallel.
--            exit 20
--      endsw
--   endif
--#
--#       3. How to run in a single computer, namely the local host.
--#          This example also presumes SysV was deliberatly *not* chosen
--#          when DDI was compiled, so that host names have to be repeated,
--#          instead of using the simpler localhost:cpus=$NCPU form.
--#
--#--   set HOSTLIST=()
--#--   @ n=1
--#--   while ($n <= $NCPUS)
--#--      set HOSTLIST=($HOSTLIST localhost)
--#--      @ n++
--#--   end
--#--   set NNODES=$NCPUS
--#
--#       4. A phony example, of four dual processors (arbitrary names)
--#          Since their names never change, we just can just specify them.
--#          Note that we can use a short name like 'bb' if and only if 
--#          system name resolution can map them onto the true host names.
--   if (`hostname` == aa.msg.chem.iastate.edu) then
--      set NCPUS=8
--      set NNODES=4
--      set HOSTLIST=(aa:cpus=2 bb:cpus=2 cc:cpus=2 dd:cpus=2)
--   endif
--#
--#       5. An example of 16 uniprocessor boxes in a Beowulf-type cluster.
--#          Because they are uniprocessors, we just set NNODES = NCPUS.
--#          Their host names fall into the pattern fly1 to fly16,
--#          which we can turn into a HOSTLIST with a small loop.
--   if (`hostname` == fly1.fi.ameslab.gov) then
--      set NNODES=$NCPUS
--      set HOSTLIST=()
--      set nmax=$NCPUS
--      if ($nmax > 16) set nmax=16
--      @ CPU=1
--      while ($CPU <= $nmax)
--         set HOSTLIST=($HOSTLIST fly$CPU)
--         @ CPU++
--      end
--      unset $CPU
--   endif
--#
- #       6. Scalable Computing Lab's clusters running PBS batch queues.
- #          Here the task is to manipulate the dynamically assigned host
- #          names into the HOSTLIST string for the kickoff program,
-@@ -604,8 +530,6 @@
- #
- #         The IBM cluster has two Gigabit adapters in each 4-way SMP,
- #         while the AXP cluster is based on a Myrinet network.
--      if (`uname` == AIX)   set NETEXT=".gig,.gig2"
--      if (`uname` == Linux) set NETEXT=".myri"
- #
- #         repeated host names in the PBS host file indicate being assigned
- #         CPUs in the same SMP enclosure, which we must count up correctly.
-@@ -636,12 +560,11 @@
-       @ NNODES = 1
-       @ NSMPCPU = 1
-       set spacer1=":cpus="
--      set spacer2=":netext="
-       while($IPROC <= $nmax)
-          set MYPROC=`sed -n -e "$IPROC p" $PBS_NODEFILE`
-          set MYPROC=`echo $MYPROC | awk '{split($0,a,"."); print a[1]}'`
-          if($MYPROC != $MYNODE) then
--            set HOSTLIST = ($HOSTLIST $MYNODE$spacer1$NSMPCPU$spacer2$NETEXT)
-+            set HOSTLIST = ($HOSTLIST $MYNODE$spacer1$NSMPCPU)
-             set MYNODE=$MYPROC
-             @ NSMPCPU = 0
-             @ NNODES++
-@@ -649,13 +572,13 @@
-          @ IPROC++
-          @ NSMPCPU++
-       end
--      set HOSTLIST = ($HOSTLIST $MYNODE$spacer1$NSMPCPU$spacer2$NETEXT)
-+      set HOSTLIST = ($HOSTLIST $MYNODE$spacer1$NSMPCPU)
-    endif
- #
- #        we have now finished setting up a correct HOSTLIST.
- #        uncomment the next two if you are doing script debugging.
--#--echo "The generated host list is"
--#--echo $HOSTLIST
-+  echo "The generated host list is"
-+  echo $HOSTLIST
- #
- 
- #        One way to be sure that the master node of each subgroup
-diff -urN gamess.orig/tools/checktst/checktst gamess/tools/checktst/checktst
---- gamess.orig/tools/checktst/checktst	2008-12-30 18:33:09.000000000 +0300
-+++ gamess/tools/checktst/checktst	2010-12-07 20:21:55.000000000 +0300
-@@ -3,11 +3,6 @@
- # Compare the results of GAMESS sample jobs to pre-stored correct values.
- # This script can be executed from any directory with write permissions.
- # Written by D. G. Fedorov, AIST, July 20, 2004.
--#
--# Only the path name in the very next line needs to be customized.
--#
--set GMSPATH=~/gamess
--
- # The Ntest outputs are assumed to be named exam01.log, exam02.log, ...
- # but the user will be allowed to specify the directory containing them.
- #
diff --git a/sci-chemistry/gamess/files/gamess-20101001.3.gentoo.patch b/sci-chemistry/gamess/files/gamess-20101001.3.gentoo.patch
new file mode 100644
index 000000000000..fe352395565a
--- /dev/null
+++ b/sci-chemistry/gamess/files/gamess-20101001.3.gentoo.patch
@@ -0,0 +1,410 @@
+diff -urN gamess.orig/comp gamess/comp
+--- gamess.orig/comp	2010-08-05 19:04:54.000000000 +0400
++++ gamess/comp	2010-12-07 20:29:13.000000000 +0300
+@@ -1390,7 +1390,7 @@
+ #   g77 does not support FORTRAN logical units above 99, or 128 bit math.
+ #
+    case g77:
+-   set OPT = '-O2'
++   set gentoo-OPT = '-O2'
+    if ($MODULE == ormas1) set OPT='-O2 -fno-move-all-movables' # RH9, g77 3.3
+    if ($MODULE == zheev)  set OPT='-O0'  # defensive compiling
+    if (($MODULE == qeigen) || ($MODULE == int2c)) then
+@@ -1420,7 +1420,7 @@
+ #      -std=legacy  suppresses warnings about use of f77 constructs.
+ #
+    case gfortran:
+-   set OPT='-O2'
++   set gentoo-OPT = '-O2'
+    if ($MODULE == zheev)  set OPT='-O0'  # defensive compiling
+    if ($MODULE == pcmcv2) set OPT='-O1'  # EFP+CPCM, ala Francois, v4.1.2
+    if (($MODULE == qeigen) || ($MODULE == int2c)) then
+@@ -1446,7 +1446,7 @@
+ #    optimizations in 32 bit mode, as a function of the ifort version.
+ #
+    case ifort:
+-   set OPT = '-O3'
++   set gentoo-OPT = '-O2'
+    if ($MODULE == delocl) set OPT='-O0'  # from Cheol
+    if ($MODULE == zheev)  set OPT='-O0'
+    set echo
+@@ -1558,7 +1558,7 @@
+    case gfortran:
+ #           -finit-real=<zero|inf|-inf|nan>  could be interesting debug opt
+ #           -fno-automatic forces static storage of all local variables
+-      set OPT='-O2'
++      set gentoo-OPT = '-O2'
+       if ($MODULE == zheev)  set OPT='-O0'  # defensive compiling
+       if (($MODULE == qeigen) || ($MODULE == int2c)) then
+          mv -f $MODULE.f $MODULE.junk
+@@ -1587,7 +1587,7 @@
+ #     -WB means warn but don't fail on out-of-bounds array references
+ #     -ftz flushes underflow results to zero
+ #
+-      set OPT = '-O2'
++      set gentoo-OPT = '-O2'
+ #       alas, I'm so tired of hearing about so many versions failing to
+ #       diagonalize, that this time critical code is run w/o optimization.
+ #       Very many (all?) ifort versions have problems with eigen.src.
+diff -urN gamess.orig/compall gamess/compall
+--- gamess.orig/compall	2010-10-01 19:37:31.000000000 +0400
++++ gamess/compall	2010-12-07 20:21:55.000000000 +0300
+@@ -84,15 +84,14 @@
+    endif
+ endif
+ if ($TARGET == linux32)      set extraflags='-DLINUX32'
+-if ($TARGET == linux64)      then
++if ($TARGET == linux64) then
++	set chip=`uname -m`
+ #      Ubuntu uses the non-standard -m flag, its -p replies "unknown"
+-                         set chip=`uname -p`
+-   if ($chip == unknown) set chip=`uname -m`
+-   if ($chip == x86_64) set extraflags='-DLINUX64 -m64'
+-   if ($chip == ia64)   set extraflags='-DLINUX64'  # this always 64 bits
++   	if ($chip == x86_64) set extraflags='-DLINUX64 -m64'
++   	if ($chip == ia64)   set extraflags='-DLINUX64'  # this always 64 bits
+ endif
+ if ($TARGET == mac32)        set extraflags='-DLINUX32'
+-if ($TARGET == mac64)    set extraflags='-DLINUX64 -m64 -I/usr/include/malloc'
++if ($TARGET == mac64)        set extraflags='-DLINUX64 -m64 -I/usr/include/malloc'
+ if ($TARGET == necsx)        set extraflags='-DNECSX -size_t64'
+ if ($TARGET == sgi32)        set extraflags='-DSGI32 -n32'
+ if ($TARGET == sgi64)        set extraflags='-DSGI64 -64'
+diff -urN gamess.orig/ddi/compddi gamess/ddi/compddi
+--- gamess.orig/ddi/compddi	2010-06-24 02:35:20.000000000 +0400
++++ gamess/ddi/compddi	2010-12-07 20:21:55.000000000 +0300
+@@ -628,7 +628,7 @@
+ 
+      set FORTRAN=$GMS_FORTRAN   # might be g77, gfortran, ifort, pgf77, f2c
+ 
+-     set CC = 'gcc'
++     set gentoo-CC = 'gcc'
+      set CFLAGS = "-DLINUX -O3 -fstrict-aliasing -I./"
+      set CLIBS  = "-lpthread"
+ 
+@@ -681,7 +681,7 @@
+                              set ARCH='-m64'
+      if (`uname -p` == ia64) set ARCH=''
+ 
+-     set CC = 'gcc'
++     set gentoo-CC = 'gcc'
+      set CFLAGS = "-DLINUX $ARCH -O3 -fstrict-aliasing -I./"
+      set CLIBS  = "-lpthread"
+ 
+diff -urN gamess.orig/ddi/kickoff/ddikick.c gamess/ddi/kickoff/ddikick.c
+--- gamess.orig/ddi/kickoff/ddikick.c	2008-05-06 14:16:12.000000000 +0400
++++ gamess/ddi/kickoff/ddikick.c	2010-12-07 20:21:55.000000000 +0300
+@@ -105,7 +105,7 @@
+           remoteshell = argv[++i];
+        } else {
+           if((remoteshell = getenv("DDI_RSH")) == NULL) {
+-              remoteshell = (char *) strdup("rsh");
++              remoteshell = (char *) strdup("ssh");
+           }
+        }
+ 
+diff -urN gamess.orig/lked gamess/lked
+--- gamess.orig/lked	2010-10-01 19:37:05.000000000 +0400
++++ gamess/lked	2010-12-07 20:26:57.000000000 +0300
+@@ -53,7 +53,7 @@
+ #
+ #   3. optional Nuclear-Electronic Orbital method, using NEO code
+ #
+-set NEO=false
++set NEO=true
+ #
+ #   4. optional Nvidia/CUDA code, for closed shell SCF Fock construction 
+ #         see ~/gamess/libqc/aaa.readme.1st for more information
+@@ -356,17 +356,17 @@
+    switch ($GMS_FORTRAN)
+      case g77:
+         set LDR='g77'
+-        set LDOPTS=' '  # add '-Wl,-M' to see load map
++        set gentoo-LDOPTS=' '  # add '-Wl,-M' to see load map
+         set FORTLIBS=' '
+         breaksw
+      case gfortran:
+         set LDR='gfortran'
+-        set LDOPTS=' '
++        set gentoo-LDOPTS=' '
+         set FORTLIBS=' '
+         breaksw
+      case ifort:
+         set LDR='ifort'
+-        set LDOPTS=' '  # add '-Wl,-M' to see load map
++        set gentoo-LDOPTS=' '  # add '-Wl,-M' to see load map
+         set FORTLIBS='-Vaxlib'
+         breaksw
+      case pgf77:
+@@ -376,7 +376,7 @@
+         breaksw
+      case f2c:
+         set LDR='gcc'
+-        set LDOPTS=' '
++        set gentoo-LDOPTS=' '
+         set FORTLIBS='-lf2c -lm'
+         breaksw
+      default:
+@@ -427,12 +427,7 @@
+       #     Otherwise, attempt a link against shared object libs.
+       #     See the 64 bit Atlas below for a way to fix the linker's
+       #     not being able to locate -lf77blas, if that happens.
+-      if (-e $GMS_MATHLIB_PATH/libf77blas.a) then
+-         set MATHLIBS="$GMS_MATHLIB_PATH/libf77blas.a"
+-         set MATHLIBS="$MATHLIBS $GMS_MATHLIB_PATH/libatlas.a"
+-      else
+-         set MATHLIBS="-L$GMS_MATHLIB_PATH -lf77blas -latlas"
+-      endif
++      set MATHLIBS=`pkg-config --libs blas`
+       set BLAS=' '
+       breaksw
+ 
+@@ -466,12 +461,12 @@
+    switch ($GMS_FORTRAN)
+       case gfortran:
+          set LDR='gfortran'
+-         set LDOPTS=' '
++         set gentoo-LDOPTS=' '
+          set FORTLIBS=' '
+          breaksw
+       case ifort:
+          set LDR='ifort'
+-         set LDOPTS='-i8'  # -Wl,-M generates a load map
++         set gentoo-LDOPTS=' '  # -Wl,-M generates a load map
+ #            this auxiliary library seems to have disappeared in ifort 10
+          set FORTLIBS=' '
+          if($GMS_IFORT_VERNO < 10) set FORTLIBS='-Vaxlib'
+@@ -549,12 +544,7 @@
+       #          ln -s liblapack_atlas.so.3.0 liblapack.so
+       #          ln -s liblapack.so.3.0       liblapack.so
+       #     It is strange the RPM's don't do these soft links for us.
+-      if (-e $GMS_MATHLIB_PATH/libf77blas.a) then
+-         set MATHLIBS="$GMS_MATHLIB_PATH/libf77blas.a"
+-         set MATHLIBS="$MATHLIBS $GMS_MATHLIB_PATH/libatlas.a"
+-      else
+-         set MATHLIBS="-L$GMS_MATHLIB_PATH -lf77blas -latlas"
+-      endif
++      set MATHLIBS=`pkg-config --libs blas`
+       set BLAS=' '
+       breaksw
+ 
+diff -urN gamess.orig/runall gamess/runall
+--- gamess.orig/runall	2009-02-28 02:57:18.000000000 +0300
++++ gamess/runall	2010-12-07 20:21:55.000000000 +0300
+@@ -10,7 +10,6 @@
+ #
+ #  Only the following two lines need to be customized:
+ #
+-chdir /u1/mike/gamess
+ set VERNO=00
+ #
+ #  Loop over all Ntest jobs supplied with GAMESS
+@@ -27,7 +26,7 @@
+      gms -v $VERNO -q ti -l exam$NUM.log exam$NUM
+      sleep 5
+   else
+-     ./rungms exam$NUM $VERNO 1  >&  exam$NUM.log
++     rungms exam$NUM $VERNO 1  >&  exam$NUM.log
+   endif
+   @ i++
+ end
+diff -urN gamess.orig/rungms gamess/rungms
+--- gamess.orig/rungms	2010-08-17 17:46:59.000000000 +0400
++++ gamess/rungms	2010-12-07 20:36:43.000000000 +0300
+@@ -55,7 +55,7 @@
+ #       one for LoadLeveler "ll-gms" on the IBM SP line.
+ #
+ set TARGET=sockets
+-set SCR=/scr/$USER
++set SCR=`pwd`
+ #
+ set JOB=$1      # name of the input file xxx.inp, give only the xxx part
+ set VERNO=$2    # revision number of the executable created by 'lked' step
+@@ -139,22 +139,22 @@
+ #  c) The NUCBAS directory is for the NEO plug-in code, see its documentation
+ #  Note that you must edit a+b, but will probably skip c+d.
+ #                        ASCII input files (see explanation above)
+-setenv AUXDATA ~mike/gamess/auxdata
++setenv AUXDATA /usr/share/gamess
+ setenv  EXTBAS /dev/null
+ setenv  NUCBAS /dev/null
+ #
+ set echo
+ #
+ setenv ERICFMT $AUXDATA/ericfmt.dat
+ setenv MCPPATH $AUXDATA/MCP
+ setenv BASPATH $AUXDATA/BASES
+ setenv QUANPOL $AUXDATA/QUANPOL
+-setenv  MAKEFP ~$USER/scr/$JOB.efp
+-setenv   GAMMA ~$USER/scr/$JOB.gamma
+-setenv TRAJECT ~$USER/scr/$JOB.trj
+-setenv RESTART ~$USER/scr/$JOB.rst
++setenv  MAKEFP $SCR/$JOB.efp
++setenv   GAMMA $SCR/$JOB.gamma
++setenv TRAJECT $SCR/$JOB.trj
++setenv RESTART $SCR/$JOB.rst
+ setenv   INPUT $SCR/$JOB.F05
+-setenv   PUNCH ~$USER/scr/$JOB.dat
++setenv   PUNCH $SCR/$JOB.dat
+ setenv  AOINTS $SCR/$JOB.F08
+ setenv  MOINTS $SCR/$JOB.F09
+ setenv DICTNRY $SCR/$JOB.F10
+@@ -321,7 +321,7 @@
+     if (null$4 == null) set ELGNAME=ELGFILE
+     set echo
+     setenv AOINTS   $SCR/$ELGNAME.F08
+-    setenv ELGDOS   ~$USER/scr/$JOB.ldos
++    setenv ELGDOS   $SCR/$JOB.ldos
+     setenv ELGDAT   $SCR/$ELGNAME.F71
+     setenv ELGPAR   $SCR/$ELGNAME.F72
+     setenv ELGCUT   $SCR/$ELGNAME.F74
+@@ -474,7 +474,7 @@
+    if ($os == AIX)     set GMSPATH=/u1/mike/gamess
+    if ($os == Darwin)  set GMSPATH=/Users/mike/desktop/gamess
+    if ($os == HP-UX)   set GMSPATH=/zr/mike/gamess
+-   if ($os == Linux)   set GMSPATH=/cu/mike/gamess
++   if ($os == Linux)   set GMSPATH=/usr/bin
+    if ($os == OSF1)    set GMSPATH=/in/mike/gamess
+    if ($os == SunOS)   set GMSPATH=/hf/mike/gamess
+ #       special compilation for Sun E450 uSPARC       (uname also= SunOS)
+@@ -543,85 +543,6 @@
+       set HOSTLIST=(`hostname`)
+    endif
+ #
+-#       2. This is an example of how to run on a 4-way SMP enclosure,
+-#          where all CPUs (aka COREs) are inside a -single- NODE.
+-#          The example is repeated for some nodes we use as 2-way's.
+-#     At other locations, you may wish to consider some of the examples
+-#     that follow below, after commenting out this ISU specific part.
+-   if ($NCPUS > 1) then
+-      switch (`hostname`)
+-         case ti.msg.chem.iastate.edu:
+-         case cd.msg.chem.iastate.edu:
+-         case zn.msg.chem.iastate.edu:
+-         case ni.msg.chem.iastate.edu:
+-         case co.msg.chem.iastate.edu:
+-         case pb.msg.chem.iastate.edu:
+-         case bi.msg.chem.iastate.edu:
+-         case po.msg.chem.iastate.edu:
+-         case at.msg.chem.iastate.edu:
+-         case sc.msg.chem.iastate.edu:
+-            if ($NCPUS > 4) set NCPUS=4
+-            set NNODES=1
+-            set HOSTLIST=(`hostname`:cpus=$NCPUS)
+-            breaksw
+-         case se.msg.chem.iastate.edu:
+-         case sb.msg.chem.iastate.edu:
+-         case br.msg.chem.iastate.edu:
+-            if ($NCPUS > 2) set NCPUS=2
+-            set NNODES=1
+-            set HOSTLIST=(`hostname`:cpus=$NCPUS)
+-            breaksw
+-         default:
+-            echo I do not know how to run this node in parallel.
+-            exit 20
+-      endsw
+-   endif
+-#
+-#       3. How to run in a single computer, namely the "localhost", so
+-#          this computer needn't have a proper Internet name.
+-#          This example also presumes SysV was deliberately *not* chosen
+-#          when DDI was compiled, so that host names have to be repeated,
+-#          instead of using the simpler localhost:cpus=$NCPU form.
+-#
+-#          This example is appropriate for use with the pre-compiled
+-#          Apple binary from our web site, provided it is uncommented,
+-#          and the passage #2 just above is deleted or commented out.
+-#
+-#--   set HOSTLIST=()
+-#--   @ n=1
+-#--   while ($n <= $NCPUS)
+-#--      set HOSTLIST=($HOSTLIST localhost)
+-#--      @ n++
+-#--   end
+-#--   set NNODES=$NCPUS
+-#
+-#       4. A phony example, of four dual processors (arbitrary names)
+-#          Since their names never change, we just can just specify them.
+-#          Note that we can use a short name like 'bb' if and only if
+-#          system name resolution can map them onto the true host names.
+-   if (`hostname` == aa.msg.chem.iastate.edu) then
+-      set NCPUS=8
+-      set NNODES=4
+-      set HOSTLIST=(aa:cpus=2 bb:cpus=2 cc:cpus=2 dd:cpus=2)
+-   endif
+-#
+-#       5. An example of 16 uniprocessor boxes in a Beowulf-type cluster.
+-#          Because they are uniprocessors, we just set NNODES = NCPUS.
+-#          Their host names fall into the pattern fly1 to fly16,
+-#          which we can turn into a HOSTLIST with a small loop.
+-   if (`hostname` == fly1.fi.ameslab.gov) then
+-      set NNODES=$NCPUS
+-      set HOSTLIST=()
+-      set nmax=$NCPUS
+-      if ($nmax > 16) set nmax=16
+-      @ CPU=1
+-      while ($CPU <= $nmax)
+-         set HOSTLIST=($HOSTLIST fly$CPU)
+-         @ CPU++
+-      end
+-      unset $CPU
+-   endif
+-#
+ #       6. Scalable Computing Lab's clusters running PBS batch queues.
+ #          Here the task is to manipulate the dynamically assigned host
+ #          names into the HOSTLIST string for the kickoff program,
+@@ -604,8 +530,6 @@
+ #
+ #         The IBM cluster has two Gigabit adapters in each 4-way SMP,
+ #         while the AXP cluster is based on a Myrinet network.
+-      if (`uname` == AIX)   set NETEXT=".gig,.gig2"
+-      if (`uname` == Linux) set NETEXT=".myri"
+ #
+ #         repeated host names in the PBS host file indicate being assigned
+ #         CPUs in the same SMP enclosure, which we must count up correctly.
+@@ -636,12 +560,11 @@
+       @ NNODES = 1
+       @ NSMPCPU = 1
+       set spacer1=":cpus="
+-      set spacer2=":netext="
+       while($IPROC <= $nmax)
+          set MYPROC=`sed -n -e "$IPROC p" $PBS_NODEFILE`
+          set MYPROC=`echo $MYPROC | awk '{split($0,a,"."); print a[1]}'`
+          if($MYPROC != $MYNODE) then
+-            set HOSTLIST = ($HOSTLIST $MYNODE$spacer1$NSMPCPU$spacer2$NETEXT)
++            set HOSTLIST = ($HOSTLIST $MYNODE$spacer1$NSMPCPU)
+             set MYNODE=$MYPROC
+             @ NSMPCPU = 0
+             @ NNODES++
+@@ -649,13 +572,13 @@
+          @ IPROC++
+          @ NSMPCPU++
+       end
+-      set HOSTLIST = ($HOSTLIST $MYNODE$spacer1$NSMPCPU$spacer2$NETEXT)
++      set HOSTLIST = ($HOSTLIST $MYNODE$spacer1$NSMPCPU)
+    endif
+ #
+ #        we have now finished setting up a correct HOSTLIST.
+ #        uncomment the next two if you are doing script debugging.
+-#--echo "The generated host list is"
+-#--echo $HOSTLIST
++  echo "The generated host list is"
++  echo $HOSTLIST
+ #
+ 
+ #        One way to be sure that the master node of each subgroup
+diff -urN gamess.orig/tools/checktst/checktst gamess/tools/checktst/checktst
+--- gamess.orig/tools/checktst/checktst	2008-12-30 18:33:09.000000000 +0300
++++ gamess/tools/checktst/checktst	2010-12-07 20:21:55.000000000 +0300
+@@ -3,11 +3,6 @@
+ # Compare the results of GAMESS sample jobs to pre-stored correct values.
+ # This script can be executed from any directory with write permissions.
+ # Written by D. G. Fedorov, AIST, July 20, 2004.
+-#
+-# Only the path name in the very next line needs to be customized.
+-#
+-set GMSPATH=~/gamess
+-
+ # The Ntest outputs are assumed to be named exam01.log, exam02.log, ...
+ # but the user will be allowed to specify the directory containing them.
+ #
diff --git a/sci-chemistry/gamess/gamess-20101001.1-r1.ebuild b/sci-chemistry/gamess/gamess-20101001.3.ebuild
index 260b9c53d6e5..7b24bd44d562 100644
--- a/sci-chemistry/gamess/gamess-20101001.1-r1.ebuild
+++ b/sci-chemistry/gamess/gamess-20101001.3.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamess/gamess-20101001.1-r1.ebuild,v 1.1 2011/01/23 12:42:58 alexxy Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamess/gamess-20101001.3.ebuild,v 1.1 2011/06/17 10:58:11 alexxy Exp $
 
 EAPI="3"
 
@@ -36,7 +36,7 @@ S="${WORKDIR}/${PN}"
 RESTRICT="fetch"
 
 GAMESS_DOWNLOAD="http://www.msg.ameslab.gov/GAMESS/License_Agreement.html"
-GAMESS_VERSION="1 OCT 2010 (R1)"
+GAMESS_VERSION="1 OCT 2010 (R3)"
 
 pkg_nofetch() {
 	echo
@@ -267,12 +267,20 @@ src_install() {
 	dodoc *.DOC qmnuc/*.DOC || die "Failed installing docs"
 
 	# install ericftm
-	insinto /usr/share/${PN}/ericfmt
-	doins ericfmt.dat || die "Failed installing ericfmt.dat"
+	insinto /usr/share/${PN}
+	doins auxdata/ericfmt.dat || die "Failed installing ericfmt.dat"
 
 	# install mcpdata
-	insinto /usr/share/${PN}/mcpdata
-	doins mcpdata/* || die "Failed installing mcpdata"
+	insinto /usr/share/${PN}/MCP
+	doins auxdata/MCP/* || die "Failed installing MCP"
+
+	# install BASES
+	insinto /usr/share/${PN}/BASES
+	doins auxdata/BASES/* || die "Failed installing BASES"
+
+	# install QUANPOL
+	insinto /usr/share/${PN}/QUANPOL
+	doins auxdata/QUANPOL/* || die "Failed installing QUANPOL"
 
 	# install tinker params in case of qmmm
 	if use qmmm-tinker ; then