diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-07-25 18:01:15 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-07-25 18:01:15 +0000 |
| commit | bd0ab2a7bdc53a8e721790178eba74dd6f1e70ed (patch) | |
| tree | 3bd469a314eaa8ed62cbbe6a64560153dbda9d9a /sci-biology | |
| parent | Move filter-flags for -fPIE before econf so it has some effect wrt #327369. (diff) | |
| download | historical-bd0ab2a7bdc53a8e721790178eba74dd6f1e70ed.tar.gz historical-bd0ab2a7bdc53a8e721790178eba74dd6f1e70ed.tar.bz2 historical-bd0ab2a7bdc53a8e721790178eba74dd6f1e70ed.zip | |
Version bump
Package-Manager: portage-2.2_rc67/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/shrimp/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/shrimp/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/shrimp/shrimp-2.0.1.ebuild | 35 |
3 files changed, 44 insertions, 12 deletions
diff --git a/sci-biology/shrimp/ChangeLog b/sci-biology/shrimp/ChangeLog index 0e1c03d8d428..992ca71461d1 100644 --- a/sci-biology/shrimp/ChangeLog +++ b/sci-biology/shrimp/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/shrimp # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v 1.8 2010/01/03 14:19:01 pacho Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v 1.9 2010/07/25 18:01:15 weaver Exp $ + +*shrimp-2.0.1 (25 Jul 2010) + + 25 Jul 2010; Andrey Kislyuk <weaver@gentoo.org> +shrimp-2.0.1.ebuild: + Version bump 03 Jan 2010; Pacho Ramos <pacho@gentoo.org> shrimp-1.3.1.ebuild: amd64 stable, bug 298764 diff --git a/sci-biology/shrimp/Manifest b/sci-biology/shrimp/Manifest index 49804ae4f088..30c23d6909c2 100644 --- a/sci-biology/shrimp/Manifest +++ b/sci-biology/shrimp/Manifest @@ -1,16 +1,8 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - DIST SHRiMP_1_2_1.src.tar.gz 102426 RMD160 59c241bfa0570b9dcf9222f6b8991ba1f88ac28a SHA1 6b54b5aa38f4d79cc3fd1fc97cd327f650f0d9ee SHA256 8fe55ca7cda3b90e8daa094fa3b4ee902271779fb5eb6a6d6f31bb4ad9a4db0a DIST SHRiMP_1_3_1.src.tar.gz 120929 RMD160 399455b93be51047958945c767a3bdd31dada88e SHA1 ce571eb23ce3172fd1303ffd71deee652e9d395e SHA256 a0847d1e05ca4c277d7be95f315b5f7d12fad0852324985660fe9ea1820487b9 +DIST SHRiMP_2_0_1.src.tar.gz 158535 RMD160 9153bb3b1cb8648a74df431537b38efa4267929a SHA1 b6b54a2990fc5193b72f2a08f47f95b527fabde3 SHA256 62557cf256421aea17a2b221ef485410be177cfc777a6bb8a3de89718d186f63 EBUILD shrimp-1.2.1.ebuild 839 RMD160 88ecf132a12ca3369417db49aebe3dab18b123f9 SHA1 c469ada9ad92df5fc7a8cb8c05c981bbb7e01f98 SHA256 4d6aabd86b1b726fcc0d1491fdc808fd6952656f7a6f770f9e2a059cdcc5809f EBUILD shrimp-1.3.1.ebuild 845 RMD160 dbabe4f8787f2be0d9afeb5704d34815e2cb32a6 SHA1 cc36b8fbf230f6d460a162785c05beccf7a534b8 SHA256 148eee6a913bb3806918369c26c876b6d4bcd81b65de4ad65d49c95d738c305e -MISC ChangeLog 1333 RMD160 52e27fd584da50571e9b8ccd035b7e549d85ae00 SHA1 a5578215574c0f633748a6214a53c58cd150648c SHA256 975e4a073e1e9466d01efa9fad5e4bd3c43d45febc3edfe583105a54413bafc0 +EBUILD shrimp-2.0.1.ebuild 893 RMD160 2ef5071d8b9f288564f4bb545cc248b2b57f7e63 SHA1 01fdb9610c493071e6596d2db5475c066dcffefc SHA256 070c1a30f314af85e83a383742d902a65d1a79a8f0fce8b2f57858f441aec53a +MISC ChangeLog 1451 RMD160 579e08f3ba45852064ac4211e06856341fabc3b8 SHA1 533b75c380f5bed2410b2256b863cf56d9327219 SHA256 7e3917a82e804699670a206a73a65d9e3fcedb88dab29f8626673aee61f1805c MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.11 (GNU/Linux) - -iEYEARECAAYFAktAp1sACgkQCaWpQKGI+9SlFQCfVxQ2e2ULAao9+CyoXVS3+PWO -Z8EAn0ih2EhLSSpmzF2neXPODqUoptUd -=pNDc ------END PGP SIGNATURE----- diff --git a/sci-biology/shrimp/shrimp-2.0.1.ebuild b/sci-biology/shrimp/shrimp-2.0.1.ebuild new file mode 100644 index 000000000000..a237b857823b --- /dev/null +++ b/sci-biology/shrimp/shrimp-2.0.1.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/shrimp-2.0.1.ebuild,v 1.1 2010/07/25 18:01:15 weaver Exp $ + +EAPI="2" + +MY_PV=${PV//./_} + +DESCRIPTION="SHort Read Mapping Package" +HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/" +SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="sys-devel/gcc[openmp]" +RDEPEND="" + +S="${WORKDIR}/SHRiMP_${MY_PV}" + +src_prepare() { + sed -i -e '1 a #include <stdint.h>' common/dag_glue.cpp || die + sed -i -e '1 a CXXFLAGS+= -O3 -mmmx -msse -msse2 -fopenmp' \ + -e 's/-static//' "${S}/Makefile" || die +} + +src_install() { + rm bin/README + dobin bin/* || die + insinto /usr/share/${PN} + doins -r utils || die + dodoc HISTORY README TODO SPLITTING_AND_MERGING +} |