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* sci-biology/hmmer: Add missing include into configureNHOrus2024-05-092-1/+20
| | | | | | | | | | | There are no autotools source files, so we can't just autoreconf the problem out of existence [sam: Revbump.] Closes: https://bugs.gentoo.org/900551 Signed-off-by: NHOrus <jy6x2b32pie9@yahoo.com> Closes: https://github.com/gentoo/gentoo/pull/36599 Signed-off-by: Sam James <sam@gentoo.org>
* sci-biology/hmmer: expose XSI pthread_setconcurrency() prototypesDavid Seifert2022-11-201-1/+4
| | | | | Closes: https://bugs.gentoo.org/882279 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/hmmer: update EAPI 6 -> 8 (3.1_beta2)David Seifert2022-07-072-14/+41
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/hmmer: update EAPI 6 -> 8 (2.3.2)David Seifert2022-07-071-11/+16
| | | | | Closes: https://bugs.gentoo.org/725306 Signed-off-by: David Seifert <soap@gentoo.org>
* **/metadata.xml: Replace http by https in DOCTYPE elementUlrich Müller2021-09-111-1/+1
| | | | | Bug: https://bugs.gentoo.org/552720 Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* */*: [QA] Fix trivial cases of MissingTestRestrictMichał Górny2019-12-112-2/+4
| | | | | | | | | | | | | | | | | | The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-biology/*: Update Manifest hashesMichał Górny2017-12-101-2/+2
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* sci-biology/hmmer: Cleanup broken versions re bug #421799Kent Fredric2017-09-261-52/+0
| | | | | Closes: https://bugs.gentoo.org/421799 Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-biology/hmmer: de-stabilizeKent Fredric2017-09-261-1/+1
| | | | | | | | | Sci Team don't want unnecessary stable pacakges, and this is not necessary. The stated stable versions are broken on all available perls anyway. Package-Manager: Portage-2.3.8, Repoman-2.3.3
* Drop $Id$ per council decision in bug #611234.Robin H. Johnson2017-02-283-3/+0
| | | | Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
* sci-biology/hmmer: Only keep amd64 and x86 in KEYWORDSDavid Seifert2017-02-062-4/+4
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3856
* sci-biology/hmmer: Remove oldDavid Seifert2017-02-064-201/+0
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3856
* sci-biology/hmmer: Properly SLOT=2 hmmer-2.3.2David Seifert2016-10-093-0/+205
| | | | | | | | | Gentoo-bug: 328911, 586960 * EAPI=6 * Introduce SLOT=2 and rename binaries and static libraries Package-Manager: portage-2.3.1
* sci-biology/hmmer: Version bump to 3.1_beta2David Seifert2016-10-094-0/+470
| | | | | | | | * EAPI=6 * Make perl shebangs portable * Install headers into 'hmmer3' subdir Package-Manager: portage-2.3.1
* sci-biology/hmmer: cheamup of 2.3.2 versionIan Stakenvicius2016-04-193-68/+15
| | | | | | | | | * Bumped EAPI * Merged KEYWORDS between 2.3.2-r1 and 2.3.2-r2 * dropped IUSE="pvm" as package was dropped 5 years ago * fixed metadata.xml to match Package-Manager: portage-2.2.26
* Set appropriate maintainer types in metadata.xml (GLEP 67)Michał Górny2016-01-241-1/+1
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* Replace all herds with appropriate projects (GLEP 67)Michał Górny2016-01-241-1/+4
| | | | | Replace all uses of herd with appropriate project maintainers, or no maintainers in case of herds requested to be disbanded.
* Update hashes in ManifestJustin Lecher2015-09-231-2/+2
| | | | | | Add missing SHA512 and WHIRLPOOL hashes Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Revert DOCTYPE SYSTEM https changes in metadata.xmlMike Gilbert2015-08-241-1/+1
| | | | | | | repoman does not yet accept the https version. This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450. Bug: https://bugs.gentoo.org/552720
* Use https by defaultJustin Lecher2015-08-241-1/+1
| | | | | | Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
* proj/gentoo: Initial commitRobin H. Johnson2015-08-087-0/+313
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed