diff options
| author |   Jakov Smolic <jakov.smolic@sartura.hr> | 2021-05-04 22:57:13 +0100 |
|---|---|---|
| committer |   Sam James <sam@gentoo.org> | 2021-05-04 23:29:36 +0100 |
| commit | 92cb6e9daf7c9865bfc003d4968b56501d5d00c6 (patch) | |
| tree | 526287523fc8209735b0afe66e3e20116d05322f /sci-biology | |
| parent | sci-biology/diya: Remove last-rited pkg (diff) | |
| download | gentoo-92cb6e9daf7c9865bfc003d4968b56501d5d00c6.tar.gz gentoo-92cb6e9daf7c9865bfc003d4968b56501d5d00c6.tar.bz2 gentoo-92cb6e9daf7c9865bfc003d4968b56501d5d00c6.zip | |
sci-biology/gatk: Remove last-rited pkg
Closes: https://bugs.gentoo.org/780396
Closes: https://bugs.gentoo.org/574632
Closes: https://bugs.gentoo.org/542940
Closes: https://bugs.gentoo.org/515816
Closes: https://bugs.gentoo.org/431644
Closes: https://bugs.gentoo.org/418625
Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr>
Closes: https://github.com/gentoo/gentoo/pull/20667
Signed-off-by: Sam James <sam@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/gatk/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/gatk/gatk-2.4.ebuild | 32 | ||||
| -rw-r--r-- | sci-biology/gatk/metadata.xml | 11 |
3 files changed, 0 insertions, 44 deletions
diff --git a/sci-biology/gatk/Manifest b/sci-biology/gatk/Manifest deleted file mode 100644 index 58798a939a0f..000000000000 --- a/sci-biology/gatk/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST gatk-2.4.tar.gz 9106774 BLAKE2B a9ac1602091a2f0902c2841942f8dd739562ef6ebbd35894fa445e6a28d748f3c645936914acbdafc8fa59330149ee5ef0738657d8e78d5cf4af5bd26e37ab6b SHA512 9050fc2024d0b3c9a6b5617787831c0496276bcd7318a872f6c1128c31fc31c6f59429a1b189e5c2cc740909b42d846b5e041f8626b03af3a80442294db34ace diff --git a/sci-biology/gatk/gatk-2.4.ebuild b/sci-biology/gatk/gatk-2.4.ebuild deleted file mode 100644 index bab228e77f5f..000000000000 --- a/sci-biology/gatk/gatk-2.4.ebuild +++ /dev/null @@ -1,32 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -EANT_BUILD_TARGET="dist" -EANT_NEEDS_TOOLS="true" -JAVA_ANT_REWRITE_CLASSPATH="true" - -inherit java-pkg-2 java-ant-2 vcs-snapshot - -DESCRIPTION="The Genome Analysis Toolkit" -HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" -SRC_URI="https://github.com/broadgsa/gatk/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=">=virtual/jre-1.6" -DEPEND="${RDEPEND}" - -src_prepare() { - java-pkg-2_src_prepare - sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die -} - -src_install() { - java-pkg_dojar dist/*.jar - java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar - java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar -} diff --git a/sci-biology/gatk/metadata.xml b/sci-biology/gatk/metadata.xml deleted file mode 100644 index 8c1bb65774cc..000000000000 --- a/sci-biology/gatk/metadata.xml +++ /dev/null @@ -1,11 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">broadgsa/gatk</remote-id> - </upstream> -</pkgmetadata> |