proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

1 files changed, 144 insertions, 0 deletions

diff --git a/licenses/namd b/licenses/namd
new file mode 100644
index 000000000000..c1e9d54aa869
--- /dev/null
+++ b/licenses/namd
@@ -0,0 +1,144 @@
++--------------------------------------------------------------------+
+|                                                                    |
+|                      University of Illinois                        |
+|                 NAMD Molecular Dynamics Software                   |
+|             Non-Exclusive, Non-Commercial Use License              |
+|                                                                    |
++--------------------------------------------------------------------+
+
+Upon execution of this Agreement by the party identified below ("Licensee"), 
+The Board of Trustees of the University of Illinois  ("Illinois"), on behalf 
+of The Theoretical and Computational Biophysics Group ("TCBG") in the Beckman
+Institute, will provide the NAMD molecular dynamics software ("NAMD") in
+Executable Code and/or Source Code form ("Software") to Licensee, subject to
+the following terms and conditions. For purposes of this Agreement,
+Executable Code is the compiled code, which is ready to run on Licensee's
+computer. Source code consists of a set of files which contain the actual
+program commands that are compiled to form the Executable Code.
+
+1. The Software is intellectual property owned by Illinois, and all right, 
+title and interest, including copyright, remain with Illinois.  Illinois 
+grants, and Licensee hereby accepts, a restricted, non-exclusive, 
+non-transferable license to use the Software for academic, research and 
+internal business purposes only, e.g. not for commercial use (see Clause 7 
+below), without a fee.
+
+2. Licensee may, at its own expense, create and freely distribute 
+complimentary works that interoperate with the Software, directing others to 
+the TCBG server to license and obtain the Software itself. Licensee may, at 
+its own expense, modify the Software to make derivative works.  Except as 
+explicitly provided below, this License shall apply to any derivative work 
+as it does to the original Software distributed by Illinois.  Any derivative 
+work should be clearly marked and renamed to notify users that it is a 
+modified version and not the original Software distributed by Illinois.  
+Licensee agrees to reproduce the copyright notice and other proprietary 
+markings on any derivative work and to include in the documentation of such 
+work the acknowledgement:
+
+"This software includes code developed by the Theoretical and Computational
+ Biophysics Group in the Beckman Institute for Advanced Science and
+ Technology at the University of Illinois at Urbana-Champaign."
+
+Licensee may redistribute without restriction works with up to 1/2 of their 
+non-comment source code derived from at most 1/10 of the non-comment source 
+code developed by Illinois and contained in the Software, provided that the 
+above directions for notice and acknowledgement are observed.  Any other 
+distribution of the Software or any derivative work requires a separate 
+license with Illinois.  Licensee may contact Illinois (namd@ks.uiuc.edu) to 
+negotiate an appropriate license for such distribution.
+
+3. Except as expressly set forth in this Agreement, THIS SOFTWARE IS PROVIDED 
+"AS IS" AND ILLINOIS MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF 
+ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES 
+OR MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT THE USE OF 
+THE SOFTWARE WILL NOT INFRINGE ANY PATENT, TRADEMARK, OR OTHER RIGHTS. 
+LICENSEE ASSUMES THE ENTIRE RISK AS TO THE RESULTS AND PERFORMANCE OF THE 
+SOFTWARE AND/OR ASSOCIATED MATERIALS.  LICENSEE AGREES THAT UNIVERSITY SHALL 
+NOT BE HELD LIABLE FOR ANY DIRECT, INDIRECT, CONSEQUENTIAL, OR INCIDENTAL 
+DAMAGES WITH RESPECT TO ANY CLAIM BY LICENSEE OR ANY THIRD PARTY ON ACCOUNT 
+OF OR ARISING FROM THIS AGREEMENT OR USE OF THE SOFTWARE AND/OR ASSOCIATED 
+MATERIALS.
+
+4. Licensee understands the Software is proprietary to Illinois. Licensee  
+agrees to take all reasonable steps to insure that the Software is  
+protected and secured from unauthorized disclosure, use, or release and  
+will treat it with at least the same level of care as Licensee would use to  
+protect and secure its own proprietary computer programs and/or information, 
+but using no less than a reasonable standard of care.  Licensee agrees to 
+provide the Software only to any other person or entity who has registered 
+with Illinois. If licensee is not registering as an individual but as an 
+institution or corporation each member of the institution or corporation 
+who has access to or uses Software must agree to and abide by the terms 
+of this license. If Licensee becomes aware of any unauthorized licensing, 
+copying or use of the Software, Licensee shall promptly notify Illinois 
+in writing. Licensee expressly agrees to use the Software only in the 
+manner and for the specific uses authorized in this Agreement.
+
+5. By using or copying this Software, Licensee agrees to abide by the  
+copyright law and all other applicable laws of the U.S. including, but not  
+limited to, export control laws and the terms of this license. Illinois  
+shall have the right to terminate this license immediately by written  
+notice upon Licensee's breach of, or non-compliance with, any
+terms of the license. Licensee may be held legally responsible for any  
+copyright infringement that is caused or encouraged by its failure to  
+abide by the terms of this license. Upon termination, Licensee agrees to  
+destroy all copies of the Software in its possession and to verify such  
+destruction in writing.
+
+6. The user agrees that any reports or published results obtained with  
+the Software will acknowledge its use by the appropriate citation as  
+follows:
+
+"NAMD was developed by the Theoretical and Computational Biophysics Group in
+ the Beckman Institute for Advanced Science and Technology at the University
+ of Illinois at Urbana-Champaign."
+
+Any published work which utilizes NAMD shall include the following reference:
+
+"Laxmikant Kale, Robert Skeel, Milind Bhandarkar, Robert Brunner,
+ Attila Gursoy, Neal Krawetz, James Phillips, Aritomo Shinozaki,
+ Krishnan Varadarajan, and Klaus Schulten. NAMD2: Greater scalability
+ for parallel molecular dynamics.  J. Comp. Phys., 151:283-312, 1999."
+
+Electronic documents will include a direct link to the official NAMD page  
+at http://www.ks.uiuc.edu/Research/namd/
+
+7. Commercial use of the Software, or derivative works based thereon,  
+REQUIRES A COMMERCIAL LICENSE.  Should Licensee wish to make commercial 
+use of the Software, Licensee will contact Illinois (namd@ks.uiuc.edu) to 
+negotiate an appropriate license for such use. Commercial use includes: 
+(1) integration of all or part of the Software into a product for sale, 
+lease or license by or on behalf of Licensee to third parties, or 
+(2) distribution of the Software to third parties that need it to 
+commercialize product sold or licensed by or on behalf of Licensee.
+
+8. Government Rights. Because substantial governmental funds have been  
+used in the development of NAMD, any possession, use or sublicense of the  
+Software by or to the United States government shall be subject to such  
+required restrictions.
+
+9. NAMD is being distributed as a research and teaching tool and as  
+such, TCBG encourages contributions from users of the code that might, at  
+Illinois' sole discretion, be used or incorporated to make the basic  
+operating framework of the Software a more stable, flexible, and/or useful  
+product.  Licensees who contribute their code to become an internal  
+portion of the Software agree that such code may be distributed by  
+Illinois under the terms of this License and may be required to sign an  
+"Agreement Regarding Contributory Code for NAMD Software" before Illinois  
+can accept it (contact namd@ks.uiuc.edu for a copy).
+
+UNDERSTOOD AND AGREED.
+
+
+Contact Information:
+
+The best contact path for licensing issues is by e-mail to  
+namd@ks.uiuc.edu or send correspondence to:
+                             NAMD Team
+                             Theoretical and Computational Biophysics Group
+                             Beckman Institute
+                             University of Illinois
+                             405 North Mathews MC-251
+                             Urbana, Illinois 61801 USA
+                             FAX: (217) 244-6078
+